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  5. Solyc05g056100.3.1

Solyc05g056100.3.1


Description : Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana (sp|q9skn2|drb2_arath : 291.0)


Gene families : OG0000434 (Archaeplastida) Phylogenetic Tree(s): OG0000434_tree ,
OG_05_0000373 (LandPlants) Phylogenetic Tree(s): OG_05_0000373_tree ,
OG_06_0000829 (SeedPlants) Phylogenetic Tree(s): OG_06_0000829_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g056100.3.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AT3G62800 DRB4 double-stranded-RNA-binding protein 4 0.03 Archaeplastida
GSVIVT01021904001 No alias Double-stranded RNA-binding protein 2 OS=Oryza sativa... 0.03 Archaeplastida
LOC_Os01g56520.1 No alias component DRB4 of DRB4-DRB7.1 siRNA biogenesis regulator complex 0.07 Archaeplastida
Pp3c17_2200V3.1 No alias dsRNA-binding domain-like superfamily protein 0.02 Archaeplastida
Smo71410 No alias Double-stranded RNA-binding protein 2 OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e019685_P001 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
CC GO:0017053 transcriptional repressor complex IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR014720 dsRBD_dom 88 153
IPR014720 dsRBD_dom 2 68
No external refs found!