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  5. Solyc06g063010.4.1

Solyc06g063010.4.1


Description : component SPT20/ADA5 of SAGA transcription co-activator complex


Gene families : OG0005278 (Archaeplastida) Phylogenetic Tree(s): OG0005278_tree ,
OG_05_0005424 (LandPlants) Phylogenetic Tree(s): OG_05_0005424_tree ,
OG_06_0008278 (SeedPlants) Phylogenetic Tree(s): OG_06_0008278_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g063010.4.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AT1G72390 No alias CONTAINS InterPro DOMAIN/s: Spt20 family... 0.03 Archaeplastida
GSVIVT01016716001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.08 Archaeplastida
LOC_Os10g25200.1 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.05 Archaeplastida
MA_10436298g0010 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.04 Archaeplastida
MA_10436398g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_114383g0010 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.02 Archaeplastida
Mp2g19910.1 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.03 Archaeplastida
Pp3c13_8340V3.1 No alias No annotation 0.06 Archaeplastida
Pp3c3_3510V3.1 No alias No annotation 0.02 Archaeplastida
Zm00001e024750_P001 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!