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AT1G43190 (PTB3)


Aliases : PTB3

Description : polypyrimidine tract-binding protein 3


Gene families : OG0003139 (Archaeplastida) Phylogenetic Tree(s): OG0003139_tree ,
OG_05_0003616 (LandPlants) Phylogenetic Tree(s): OG_05_0003616_tree ,
OG_06_0003439 (SeedPlants) Phylogenetic Tree(s): OG_06_0003439_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G43190
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Pp3c14_14100V3.1 No alias polypyrimidine tract-binding protein 3 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000932 P-body IDA Interproscan
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
BP GO:0006417 regulation of translation IEP Interproscan
BP GO:0043484 regulation of RNA splicing IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Neighborhood
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000723 telomere maintenance IEP Neighborhood
BP GO:0001932 regulation of protein phosphorylation IEP Neighborhood
BP GO:0001934 positive regulation of protein phosphorylation IEP Neighborhood
BP GO:0002252 immune effector process IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004676 3-phosphoinositide-dependent protein kinase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0004845 uracil phosphoribosyltransferase activity IEP Neighborhood
MF GO:0004849 uridine kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005697 telomerase holoenzyme complex IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006109 regulation of carbohydrate metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Neighborhood
BP GO:0006222 UMP biosynthetic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006505 GPI anchor metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007276 gamete generation IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0008655 pyrimidine-containing compound salvage IEP Neighborhood
MF GO:0008676 3-deoxy-8-phosphooctulonate synthase activity IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009129 pyrimidine nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009163 nucleoside biosynthetic process IEP Neighborhood
BP GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009174 pyrimidine ribonucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009432 SOS response IEP Neighborhood
CC GO:0009527 plastid outer membrane IEP Neighborhood
BP GO:0009615 response to virus IEP Neighborhood
BP GO:0009616 virus induced gene silencing IEP Neighborhood
CC GO:0009707 chloroplast outer membrane IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0010050 vegetative phase change IEP Neighborhood
BP GO:0010138 pyrimidine ribonucleotide salvage IEP Neighborhood
BP GO:0010306 rhamnogalacturonan II biosynthetic process IEP Neighborhood
BP GO:0010383 cell wall polysaccharide metabolic process IEP Neighborhood
BP GO:0010393 galacturonan metabolic process IEP Neighborhood
BP GO:0010396 rhamnogalacturonan II metabolic process IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010562 positive regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010675 regulation of cellular carbohydrate metabolic process IEP Neighborhood
MF GO:0015562 efflux transmembrane transporter activity IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
MF GO:0019206 nucleoside kinase activity IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
MF GO:0019211 phosphatase activator activity IEP Neighborhood
BP GO:0019294 keto-3-deoxy-D-manno-octulosonic acid biosynthetic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031401 positive regulation of protein modification process IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0032204 regulation of telomere maintenance IEP Neighborhood
BP GO:0032206 positive regulation of telomere maintenance IEP Neighborhood
BP GO:0032210 regulation of telomere maintenance via telomerase IEP Neighborhood
BP GO:0032212 positive regulation of telomere maintenance via telomerase IEP Neighborhood
BP GO:0032262 pyrimidine nucleotide salvage IEP Neighborhood
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0032875 regulation of DNA endoreduplication IEP Neighborhood
BP GO:0032881 regulation of polysaccharide metabolic process IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0033674 positive regulation of kinase activity IEP Neighborhood
BP GO:0035821 modification of morphology or physiology of other organism IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0042162 telomeric DNA binding IEP Neighborhood
BP GO:0042325 regulation of phosphorylation IEP Neighborhood
BP GO:0042327 positive regulation of phosphorylation IEP Neighborhood
BP GO:0042455 ribonucleoside biosynthetic process IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
MF GO:0043047 single-stranded telomeric DNA binding IEP Neighborhood
BP GO:0043097 pyrimidine nucleoside salvage IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043173 nucleotide salvage IEP Neighborhood
BP GO:0043174 nucleoside salvage IEP Neighborhood
BP GO:0043247 telomere maintenance in response to DNA damage IEP Neighborhood
BP GO:0043549 regulation of kinase activity IEP Neighborhood
BP GO:0043687 post-translational protein modification IEP Neighborhood
BP GO:0044003 modification by symbiont of host morphology or physiology IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
BP GO:0044206 UMP salvage IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044419 interspecies interaction between organisms IEP Neighborhood
BP GO:0045488 pectin metabolic process IEP Neighborhood
BP GO:0045489 pectin biosynthetic process IEP Neighborhood
BP GO:0045859 regulation of protein kinase activity IEP Neighborhood
BP GO:0045860 positive regulation of protein kinase activity IEP Neighborhood
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0045937 positive regulation of phosphate metabolic process IEP Neighborhood
BP GO:0046049 UMP metabolic process IEP Neighborhood
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046132 pyrimidine ribonucleoside biosynthetic process IEP Neighborhood
BP GO:0046134 pyrimidine nucleoside biosynthetic process IEP Neighborhood
BP GO:0046364 monosaccharide biosynthetic process IEP Neighborhood
BP GO:0046400 keto-3-deoxy-D-manno-octulosonic acid metabolic process IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051054 positive regulation of DNA metabolic process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051247 positive regulation of protein metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051302 regulation of cell division IEP Neighborhood
BP GO:0051338 regulation of transferase activity IEP Neighborhood
BP GO:0051347 positive regulation of transferase activity IEP Neighborhood
BP GO:0051607 defense response to virus IEP Neighborhood
BP GO:0051701 interaction with host IEP Neighborhood
BP GO:0051817 modification of morphology or physiology of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052018 modulation by symbiont of RNA levels in host IEP Neighborhood
BP GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052325 cell wall pectin biosynthetic process IEP Neighborhood
BP GO:0052546 cell wall pectin metabolic process IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
MF GO:0070300 phosphatidic acid binding IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Neighborhood
BP GO:0098586 cellular response to virus IEP Neighborhood
MF GO:0098847 sequence-specific single stranded DNA binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1904356 regulation of telomere maintenance via telomere lengthening IEP Neighborhood
BP GO:1904358 positive regulation of telomere maintenance via telomere lengthening IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
BP GO:2000278 regulation of DNA biosynthetic process IEP Neighborhood
BP GO:2000573 positive regulation of DNA biosynthetic process IEP Neighborhood
BP GO:2000904 regulation of starch metabolic process IEP Neighborhood
BP GO:2001252 positive regulation of chromosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 59
IPR000504 RRM_dom 360 422
IPR021790 DUF3355 98 175
No external refs found!