1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g065730.3.1

Solyc06g065730.3.1


Description : chromatin remodeling factor (Chd3/Mi-2)


Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0005856 (LandPlants) Phylogenetic Tree(s): OG_05_0005856_tree ,
OG_06_0008938 (SeedPlants) Phylogenetic Tree(s): OG_06_0008938_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g065730.3.1
Cluster HCCA: Cluster_260

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00216420 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
AMTR_s00053p00098350 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
AMTR_s00071p00058700 evm_27.TU.AmTr_v1... CHD3-type chromatin-remodeling factor PICKLE... 0.07 Archaeplastida
AMTR_s00086p00165640 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.06 Archaeplastida
AMTR_s00090p00148990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.07 Archaeplastida
AMTR_s00148p00090060 evm_27.TU.AmTr_v1... Helicase protein MOM1 OS=Arabidopsis thaliana 0.08 Archaeplastida
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.1 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.07 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.07 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.08 Archaeplastida
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.09 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.08 Archaeplastida
AT5G19310 No alias Homeotic gene regulator 0.02 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.09 Archaeplastida
Cpa|evm.model.tig00000128.11 No alias ISWI chromatin-remodeling complex ATPase CHR17... 0.01 Archaeplastida
Cpa|evm.model.tig00000217.25 No alias Chromatin structure-remodeling complex protein SYD... 0.02 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cpa|evm.model.tig00000983.26 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 Archaeplastida
Cre07.g325700 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre08.g377200 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Archaeplastida
Cre09.g390000 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.01 Archaeplastida
Cre12.g508150 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
Cre16.g647602 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.07 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.06 Archaeplastida
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.08 Archaeplastida
GSVIVT01017821001 No alias No description available 0.08 Archaeplastida
GSVIVT01018218001 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
GSVIVT01025216001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01026952001 No alias Chromatin organisation.chromatin remodeling... 0.09 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.07 Archaeplastida
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.06 Archaeplastida
Gb_01673 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_05671 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Archaeplastida
Gb_16961 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
Gb_18673 No alias chromatin remodeling factor (Chd3/Mi-2) 0.05 Archaeplastida
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Gb_35181 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
Gb_39649 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
LOC_Os02g02290.1 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
LOC_Os07g31450.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.06 Archaeplastida
MA_102992g0020 No alias Probable chromatin-remodeling complex ATPase chain... 0.04 Archaeplastida
MA_10427682g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_10436824g0010 No alias No annotation 0.03 Archaeplastida
MA_137856g0010 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
MA_141135g0010 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.03 Archaeplastida
MA_9572741g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.04 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.07 Archaeplastida
Mp1g18560.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Archaeplastida
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Mp5g06580.2 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
Mp8g17660.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Pp3c10_2280V3.1 No alias chromatin remodeling 4 0.03 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.07 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.05 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.06 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.07 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.05 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.06 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.05 Archaeplastida
Pp3c3_15820V3.1 No alias transcription regulatory protein SNF2, putative 0.06 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.06 Archaeplastida
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.03 Archaeplastida
Smo102849 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.06 Archaeplastida
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.06 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo440558 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.04 Archaeplastida
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.05 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.07 Archaeplastida
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
Zm00001e036737_P001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Zm00001e039130_P001 No alias Probable plastid-lipid-associated protein 8,... 0.01 Archaeplastida
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004176 ATP-dependent peptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004819 glutamine-tRNA ligase activity IEP Neighborhood
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006474 N-terminal protein amino acid acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006497 protein lipidation IEP Neighborhood
BP GO:0006505 GPI anchor metabolic process IEP Neighborhood
BP GO:0006506 GPI anchor biosynthetic process IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006623 protein targeting to vacuole IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018206 peptidyl-methionine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
CC GO:0030906 retromer, cargo-selective complex IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
BP GO:0031365 N-terminal protein amino acid modification IEP Neighborhood
CC GO:0031414 N-terminal protein acetyltransferase complex IEP Neighborhood
CC GO:0031417 NatC complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
CC GO:0070652 HAUS complex IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072665 protein localization to vacuole IEP Neighborhood
BP GO:0072666 establishment of protein localization to vacuole IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR023780 Chromo_domain 17 47
IPR023780 Chromo_domain 84 132
IPR009463 DUF1087 743 795
IPR009462 DUF1086 828 958
IPR001650 Helicase_C 499 612
IPR000330 SNF2_N 199 477
No external refs found!