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  5. Solyc06g071350.4.1

Solyc06g071350.4.1


Description : no hits & (original description: none)


Gene families : OG0001277 (Archaeplastida) Phylogenetic Tree(s): OG0001277_tree ,
OG_05_0002284 (LandPlants) Phylogenetic Tree(s): OG_05_0002284_tree ,
OG_06_0002463 (SeedPlants) Phylogenetic Tree(s): OG_06_0002463_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g071350.4.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00111920 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AT3G48050 No alias BAH domain ;TFIIS helical bundle-like domain 0.12 Archaeplastida
AT3G48060 No alias BAH domain ;TFIIS helical bundle-like domain 0.11 Archaeplastida
Cpa|evm.model.tig00001215.1 No alias No description available 0.01 Archaeplastida
Cre01.g048850 No alias No description available 0.04 Archaeplastida
Cre06.g292650 No alias No description available 0.02 Archaeplastida
GSVIVT01007806001 No alias No description available 0.1 Archaeplastida
GSVIVT01032521001 No alias No description available 0.07 Archaeplastida
Gb_02775 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_05690 No alias no hits & (original description: none) 0.06 Archaeplastida
Gb_20760 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os02g50840.2 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os02g50850.2 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_10432920g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_39143g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_39143g0020 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp4g16160.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp4g16230.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c11_22570V3.1 No alias BAH domain ;TFIIS helical bundle-like domain 0.11 Archaeplastida
Pp3c7_2900V3.1 No alias BAH domain ;TFIIS helical bundle-like domain 0.08 Archaeplastida
Zm00001e002441_P003 No alias no hits & (original description: none) 0.18 Archaeplastida
Zm00001e037792_P001 No alias no hits & (original description: none) 0.14 Archaeplastida
Zm00001e037793_P001 No alias no hits & (original description: none) 0.15 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0043085 positive regulation of catalytic activity IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0044093 positive regulation of molecular function IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR017923 TFIIS_N 363 412
IPR001025 BAH_dom 55 165
No external refs found!