Solyc06g072120.3.1

Description : component RPSa of SSU proteome

Gene families : OG0002241 (Archaeplastida) Phylogenetic Tree(s): OG0002241_tree ,
OG_05_0002670 (LandPlants) Phylogenetic Tree(s): OG_05_0002670_tree ,
OG_06_0002731 (SeedPlants) Phylogenetic Tree(s): OG_06_0002731_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g072120.3.1
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00244660	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	Archaeplastida
AMTR_s00041p00084080	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.13	Archaeplastida
AT1G72370	P40, AP40, RPSAA, RP40	40s ribosomal protein SA	0.47	Archaeplastida
AT3G04770	RPSAb	40s ribosomal protein SA B	0.06	Archaeplastida
Cre10.g432800	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	Archaeplastida
GSVIVT01016695001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.26	Archaeplastida
Gb_02349	No alias	component RPSa of SSU proteome	0.07	Archaeplastida
Gb_10091	No alias	component RPSa of SSU proteome	0.04	Archaeplastida
LOC_Os03g08440.1	No alias	component RPSa of SSU proteome	0.1	Archaeplastida
LOC_Os07g42450.1	No alias	component RPSa of SSU proteome	0.2	Archaeplastida
MA_10436984g0020	No alias	component RPSa of SSU proteome	0.14	Archaeplastida
MA_112104g0010	No alias	component RPSa of SSU proteome	0.21	Archaeplastida
Mp2g26290.1	No alias	component RPSa of SSU proteome	0.42	Archaeplastida
Pp3c14_15670V3.1	No alias	40s ribosomal protein SA	0.02	Archaeplastida
Pp3c14_15700V3.1	No alias	40s ribosomal protein SA B	0.14	Archaeplastida
Pp3c14_17310V3.1	No alias	40s ribosomal protein SA B	0.14	Archaeplastida
Pp3c17_17600V3.1	No alias	40s ribosomal protein SA	0.27	Archaeplastida
Pp3c1_24120V3.1	No alias	40s ribosomal protein SA	0.12	Archaeplastida
Smo36118	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
Zm00001e000273_P001	No alias	component RPSa of SSU proteome	0.3	Archaeplastida
Zm00001e010780_P001	No alias	component RPSa of SSU proteome	0.28	Archaeplastida
Zm00001e038859_P001	No alias	component RPSa of SSU proteome	0.32	Archaeplastida
Zm00001e038860_P002	No alias	component RPSa of SSU proteome	0.01	Archaeplastida
Zm00001e038933_P001	No alias	component RPSa of SSU proteome	0.37	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	Neighborhood
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0030488	tRNA methylation	IEP	Neighborhood
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
CC	GO:0034708	methyltransferase complex	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
CC	GO:0043527	tRNA methyltransferase complex	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001865	Ribosomal_S2	19	114
IPR001865	Ribosomal_S2	117	183

External Links

No external refs found!

Solyc06g072120.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation