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  5. AMTR_s00027p00144540

AMTR_s00027p00144540 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00027.46

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP I/II transcription factor


Gene families : OG0000146 (Archaeplastida) Phylogenetic Tree(s): OG0000146_tree ,
OG_05_0000061 (LandPlants) Phylogenetic Tree(s): OG_05_0000061_tree ,
OG_06_0000101 (SeedPlants) Phylogenetic Tree(s): OG_06_0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00027p00144540
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000789.4 No alias RNA biosynthesis.transcriptional activation.HB... 0.01 Archaeplastida
Gb_08575 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
LOC_Os03g08960.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
Pp3c14_21620V3.1 No alias homeobox protein 6 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Neighborhood
CC GO:0005740 mitochondrial envelope IEP Neighborhood
CC GO:0005750 mitochondrial respiratory chain complex III IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
CC GO:0031967 organelle envelope IEP Neighborhood
CC GO:0031975 envelope IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0045275 respiratory chain complex III IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
CC GO:0070069 cytochrome complex IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
CC GO:0098803 respiratory chain complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 16 71
IPR003106 Leu_zip_homeo 73 115
No external refs found!