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  5. Solyc06g082870.4.1

Solyc06g082870.4.1


Description : component RPL5 of LSU proteome component


Gene families : OG0002752 (Archaeplastida) Phylogenetic Tree(s): OG0002752_tree ,
OG_05_0002866 (LandPlants) Phylogenetic Tree(s): OG_05_0002866_tree ,
OG_06_0003201 (SeedPlants) Phylogenetic Tree(s): OG_06_0003201_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g082870.4.1
Cluster HCCA: Cluster_222

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00162800 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
AT3G25520 OLI5, RPL5A, PGY3, ATL5 ribosomal protein L5 0.23 Archaeplastida
AT5G39740 OLI7, RPL5B ribosomal protein L5 B 0.23 Archaeplastida
Cpa|evm.model.tig00000194.49 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 Archaeplastida
Cre14.g621450 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
GSVIVT01038188001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
Gb_16695 No alias component RPL5 of LSU proteome component 0.09 Archaeplastida
LOC_Os01g67134.1 No alias component RPL5 of LSU proteome component 0.21 Archaeplastida
MA_70965g0010 No alias component RPL5 of LSU proteome component 0.15 Archaeplastida
Mp4g15800.1 No alias component RPL5 of LSU proteome component 0.23 Archaeplastida
Pp3c11_6420V3.1 No alias ribosomal protein L5 B 0.19 Archaeplastida
Pp3c1_7160V3.1 No alias ribosomal protein L5 B 0.14 Archaeplastida
Pp3c2_31540V3.1 No alias ribosomal protein L5 B 0.1 Archaeplastida
Pp3c7_25660V3.1 No alias ribosomal protein L5 B 0.21 Archaeplastida
Smo144921 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
Zm00001e000256_P001 No alias component RPL5 of LSU proteome component 0.12 Archaeplastida
Zm00001e018972_P001 No alias component RPL5 of LSU proteome component 0.11 Archaeplastida
Zm00001e028563_P004 No alias component RPL5 of LSU proteome component 0.21 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0008097 5S rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000808 origin recognition complex IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR025607 Rbsml_L5e/L18P_C 227 316
IPR005485 Rbsml_L5_euk/L18_arc 50 211
No external refs found!