1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00027p00222730

AMTR_s00027p00222730 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00027.93

No description available


Gene families : OG0000959 (Archaeplastida) Phylogenetic Tree(s): OG0000959_tree ,
OG_05_0000587 (LandPlants) Phylogenetic Tree(s): OG_05_0000587_tree ,
OG_06_0000880 (SeedPlants) Phylogenetic Tree(s): OG_06_0000880_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00027p00222730
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01015774001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01018805001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01022440001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_21243 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 Archaeplastida
Gb_38984 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os07g27110.1 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10436637g0030 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 Archaeplastida
MA_169053g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 Archaeplastida
MA_8142g0020 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 Archaeplastida
MA_92056g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 Archaeplastida
Solyc01g088800.4.1 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 Archaeplastida
Solyc10g062180.2.1 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 Archaeplastida
Solyc10g062340.2.1 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 Archaeplastida
Solyc10g076870.2.1 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e007365_P001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 116 180
No external refs found!