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  5. AMTR_s00027p00247950

AMTR_s00027p00247950 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00027.161

Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0037028 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00027p00247950
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00264370 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00056p00166920 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
AT2G36710 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G26810 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G47500 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01013832001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01013839001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01015852001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01023786001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01028170001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Gb_01460 No alias pectin methylesterase 0.02 Archaeplastida
Gb_27225 No alias pectin methylesterase 0.03 Archaeplastida
MA_10267810g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_10428610g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_14449g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_66089g0010 No alias pectin methylesterase 0.02 Archaeplastida
Mp2g01420.1 No alias pectin methylesterase 0.04 Archaeplastida
Mp2g19430.1 No alias pectin methylesterase 0.03 Archaeplastida
Mp3g01170.1 No alias pectin methylesterase 0.03 Archaeplastida
Mp5g03920.1 No alias pectin methylesterase 0.04 Archaeplastida
Mp5g03930.1 No alias pectin methylesterase 0.04 Archaeplastida
Pp3c10_18650V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c10_20120V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c12_23790V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c12_24000V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c16_19430V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c18_13190V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Pp3c19_8330V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_6010V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c25_3840V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_30560V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c5_12660V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c5_12770V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c5_12820V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c5_23400V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c8_1440V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c8_1680V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c8_2010V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Solyc01g109740.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc07g043240.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc08g078640.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e029074_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e035522_P001 No alias pectin methylesterase 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003840 obsolete gamma-glutamyltransferase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 51 289
No external refs found!