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  5. Solyc07g062470.4.1

Solyc07g062470.4.1


Description : Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana (sp|q9s7r3|lsh10_arath : 202.0)


Gene families : OG0000579 (Archaeplastida) Phylogenetic Tree(s): OG0000579_tree ,
OG_05_0000324 (LandPlants) Phylogenetic Tree(s): OG_05_0000324_tree ,
OG_06_0000239 (SeedPlants) Phylogenetic Tree(s): OG_06_0000239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g062470.4.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00052610 evm_27.TU.AmTr_v1... Protein G1-like2 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
AT1G07090 LSH6 Protein of unknown function (DUF640) 0.02 Archaeplastida
AT5G58500 LSH5 Protein of unknown function (DUF640) 0.03 Archaeplastida
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.04 Archaeplastida
Gb_15426 No alias Protein G1-like5 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os02g07030.1 No alias Protein G1-like1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os02g56610.1 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
LOC_Os05g28040.1 No alias Protein G1-like9 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
LOC_Os06g46030.1 No alias Protein G1-like2 OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
Mp2g00330.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 Archaeplastida
Pp3c8_6310V3.1 No alias Protein of unknown function (DUF640) 0.02 Archaeplastida
Solyc06g083860.2.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 Archaeplastida
Zm00001e019403_P001 No alias Protein G1-like7 OS=Oryza sativa subsp. indica... 0.05 Archaeplastida
Zm00001e027222_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.03 Archaeplastida
Zm00001e027283_P001 No alias Protein G1-like8 OS=Oryza sativa subsp. japonica... 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004133 glycogen debranching enzyme activity IEP Neighborhood
MF GO:0004134 4-alpha-glucanotransferase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
MF GO:0004645 phosphorylase activity IEP Neighborhood
MF GO:0005244 voltage-gated ion channel activity IEP Neighborhood
MF GO:0005247 voltage-gated chloride channel activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
MF GO:0005254 chloride channel activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006821 chloride transport IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008184 glycogen phosphorylase activity IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Neighborhood
MF GO:0015108 chloride transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022832 voltage-gated channel activity IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006936 ALOG_dom 32 153
No external refs found!