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  5. Solyc08g008220.3.1

Solyc08g008220.3.1


Description : conjugation E2 protein


Gene families : OG0000275 (Archaeplastida) Phylogenetic Tree(s): OG0000275_tree ,
OG_05_0000172 (LandPlants) Phylogenetic Tree(s): OG_05_0000172_tree ,
OG_06_0000190 (SeedPlants) Phylogenetic Tree(s): OG_06_0000190_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g008220.3.1
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00142370 evm_27.TU.AmTr_v1... Protein degradation.peptide... 0.03 Archaeplastida
AT5G41700 ATUBC8, UBC8 ubiquitin conjugating enzyme 8 0.03 Archaeplastida
AT5G53300 UBC10 ubiquitin-conjugating enzyme 10 0.07 Archaeplastida
AT5G56150 UBC30 ubiquitin-conjugating enzyme 30 0.03 Archaeplastida
Cre06.g292800 No alias Protein degradation.peptide... 0.02 Archaeplastida
GSVIVT01019484001 No alias Protein degradation.peptide... 0.07 Archaeplastida
GSVIVT01025872001 No alias Protein degradation.peptide... 0.03 Archaeplastida
Gb_10818 No alias conjugation E2 protein 0.04 Archaeplastida
LOC_Os07g38940.1 No alias E2 conjugating component COP10 of COP10-DET1 (CDD) subcomplex 0.03 Archaeplastida
Mp5g21800.1 No alias conjugation E2 protein 0.03 Archaeplastida
Mp7g03500.1 No alias conjugation E2 protein. E2 conjugating component COP10... 0.04 Archaeplastida
Pp3c24_130V3.1 No alias Ubiquitin-conjugating enzyme family protein 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 5 141
No external refs found!