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  5. AMTR_s00029p00132520

AMTR_s00029p00132520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.150

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL23a component


Gene families : OG0002506 (Archaeplastida) Phylogenetic Tree(s): OG0002506_tree ,
OG_05_0002661 (LandPlants) Phylogenetic Tree(s): OG_05_0002661_tree ,
OG_06_0002546 (SeedPlants) Phylogenetic Tree(s): OG_06_0002546_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00132520
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AT2G39460 RPL23A, RPL23AA, ATRPL23A ribosomal protein L23AA 0.18 Archaeplastida
AT3G55280 RPL23AB ribosomal protein L23AB 0.14 Archaeplastida
Cpa|evm.model.tig00000037.39 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
Cre06.g282500 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
GSVIVT01025606001 No alias 60S ribosomal protein L23a-1 OS=Arabidopsis thaliana 0.06 Archaeplastida
LOC_Os01g24690.1 No alias component RPL23a of LSU proteome component 0.12 Archaeplastida
LOC_Os04g42270.2 No alias component RPL23a of LSU proteome component 0.14 Archaeplastida
MA_10430928g0010 No alias component RPL23a of LSU proteome component 0.19 Archaeplastida
Mp2g00570.1 No alias component RPL23a of LSU proteome component 0.21 Archaeplastida
Pp3c12_19360V3.1 No alias ribosomal protein L23AB 0.14 Archaeplastida
Pp3c13_15920V3.1 No alias ribosomal protein L23AB 0.07 Archaeplastida
Pp3c3_21160V3.1 No alias ribosomal protein L23AB 0.14 Archaeplastida
Pp3c4_8620V3.1 No alias ribosomal protein L23AB 0.15 Archaeplastida
Smo271663 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
Solyc09g005720.3.1 No alias component RPL23a of LSU proteome component 0.12 Archaeplastida
Solyc10g084610.3.1 No alias component RPL23a of LSU proteome component 0.07 Archaeplastida
Solyc10g086330.2.1 No alias component RPL23a of LSU proteome component 0.1 Archaeplastida
Zm00001e007662_P001 No alias component RPL23a of LSU proteome component 0.08 Archaeplastida
Zm00001e031062_P001 No alias component RPL23a of LSU proteome component 0.02 Archaeplastida
Zm00001e041164_P001 No alias component RPL23a of LSU proteome component 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013025 Ribosomal_L25/23 73 151
IPR005633 Ribosomal_L23/L25_N 13 67
No external refs found!