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  5. Solyc08g077910.3.1

Solyc08g077910.3.1


Description : beta-like-class expansin


Gene families : OG0004259 (Archaeplastida) Phylogenetic Tree(s): OG0004259_tree ,
OG_05_0002947 (LandPlants) Phylogenetic Tree(s): OG_05_0002947_tree ,
OG_06_0001704 (SeedPlants) Phylogenetic Tree(s): OG_06_0001704_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g077910.3.1
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00146900 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.05 Archaeplastida
AMTR_s00002p00195390 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.03 Archaeplastida
AT4G17030 ATHEXP BETA 3.1,... expansin-like B1 0.03 Archaeplastida
GSVIVT01004469001 No alias Expansin-like B1 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01004595001 No alias Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.04 Archaeplastida
GSVIVT01005915001 No alias Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.02 Archaeplastida
GSVIVT01005917001 No alias Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.08 Archaeplastida
GSVIVT01013208001 No alias Cell wall.cell wall proteins.expansins.beta-like-type expansin 0.08 Archaeplastida
Gb_10700 No alias beta-like-class expansin 0.02 Archaeplastida
Gb_10701 No alias beta-like-class expansin 0.05 Archaeplastida
Gb_10702 No alias beta-like-class expansin 0.08 Archaeplastida
Gb_10703 No alias beta-like-class expansin 0.09 Archaeplastida
LOC_Os07g31390.1 No alias beta-like-class expansin 0.02 Archaeplastida
MA_41212g0010 No alias beta-like-class expansin 0.03 Archaeplastida
Solyc06g060970.2.1 No alias beta-like-class expansin 0.06 Archaeplastida
Solyc08g077330.3.1 No alias beta-like-class expansin 0.09 Archaeplastida
Solyc08g077900.3.1 No alias beta-like-class expansin 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 152 234
IPR009009 RlpA-like_DPBB 64 141
No external refs found!