Solyc08g079180.3.1

Description : EF-G translation elongation factor

Gene families : OG0001646 (Archaeplastida) Phylogenetic Tree(s): OG0001646_tree ,
OG_05_0006846 (LandPlants) Phylogenetic Tree(s): OG_05_0006846_tree ,
OG_06_0009890 (SeedPlants) Phylogenetic Tree(s): OG_06_0009890_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc08g079180.3.1
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00149p00031690	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.04	Archaeplastida
AT1G62750	ATSCO1/CPEF-G,...	Translation elongation factor EFG/EF2 protein	0.05	Archaeplastida
Cre02.g076250	No alias	Protein biosynthesis.organelle translation...	0.03	Archaeplastida
Cre11.g467553	No alias	Elongation factor G, mitochondrial OS=Oryza sativa...	0.02	Archaeplastida
GSVIVT01006035001	No alias	Protein biosynthesis.organelle translation...	0.05	Archaeplastida
Gb_36066	No alias	EF-G translation elongation factor	0.03	Archaeplastida
LOC_Os04g45490.1	No alias	EF-G translation elongation factor	0.08	Archaeplastida
Mp7g06620.1	No alias	EF-G translation elongation factor	0.05	Archaeplastida
Pp3c12_11700V3.1	No alias	Translation elongation factor EFG/EF2 protein	0.05	Archaeplastida
Smo143627	No alias	Protein biosynthesis.organelle translation...	0.02	Archaeplastida
Zm00001e041325_P001	No alias	EF-G translation elongation factor	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0003856	3-dehydroquinate synthase activity	IEP	Neighborhood
MF	GO:0004751	ribose-5-phosphate isomerase activity	IEP	Neighborhood
MF	GO:0004807	triose-phosphate isomerase activity	IEP	Neighborhood
CC	GO:0005779	integral component of peroxisomal membrane	IEP	Neighborhood
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0009052	pentose-phosphate shunt, non-oxidative branch	IEP	Neighborhood
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Neighborhood
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Neighborhood
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Neighborhood
BP	GO:0009767	photosynthetic electron transport chain	IEP	Neighborhood
BP	GO:0010207	photosystem II assembly	IEP	Neighborhood
BP	GO:0016559	peroxisome fission	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Neighborhood
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Neighborhood
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Neighborhood
CC	GO:0019898	extrinsic component of membrane	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0031231	intrinsic component of peroxisomal membrane	IEP	Neighborhood
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Neighborhood
CC	GO:0031301	integral component of organelle membrane	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044438	microbody part	IEP	Neighborhood
CC	GO:0044439	peroxisomal part	IEP	Neighborhood
MF	GO:0047429	nucleoside-triphosphate diphosphatase activity	IEP	Neighborhood
BP	GO:0048285	organelle fission	IEP	Neighborhood
MF	GO:0051536	iron-sulfur cluster binding	IEP	Neighborhood
MF	GO:0051540	metal cluster binding	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005517	Transl_elong_EFG/EF2_IV	569	687
IPR000795	TF_GTP-bd_dom	99	371
IPR000640	EFG_V-like	690	777
IPR004161	EFTu-like_2	414	480

External Links

No external refs found!

Solyc08g079180.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation