Solyc09g074680.3.1

Description : scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3 ligase complexes

Gene families : OG0001282 (Archaeplastida) Phylogenetic Tree(s): OG0001282_tree ,
OG_05_0001376 (LandPlants) Phylogenetic Tree(s): OG_05_0001376_tree ,
OG_06_0000966 (SeedPlants) Phylogenetic Tree(s): OG_06_0000966_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g074680.3.1
Cluster	HCCA: Cluster_215

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00248p00017710	evm_27.TU.AmTr_v1...	Cullin-1 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT1G59790	No alias	Cullin family protein	0.03	Archaeplastida
GSVIVT01010966001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01017738001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Gb_16689	No alias	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.02	Archaeplastida
LOC_Os05g05700.1	No alias	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.03	Archaeplastida
Mp8g03110.1	No alias	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.02	Archaeplastida
Pp3c5_14660V3.1	No alias	cullin 1	0.02	Archaeplastida
Zm00001e040431_P004	No alias	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
MF	GO:0031625	ubiquitin protein ligase binding	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Neighborhood
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
CC	GO:0005666	RNA polymerase III complex	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006383	transcription by RNA polymerase III	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006914	autophagy	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
MF	GO:0008417	fucosyltransferase activity	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
BP	GO:0016579	protein deubiquitination	IEP	Neighborhood
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Neighborhood
CC	GO:0030684	preribosome	IEP	Neighborhood
CC	GO:0030880	RNA polymerase complex	IEP	Neighborhood
MF	GO:0031369	translation initiation factor binding	IEP	Neighborhood
CC	GO:0032040	small-subunit processome	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
CC	GO:0044445	cytosolic part	IEP	Neighborhood
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Neighborhood
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Neighborhood
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Neighborhood
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Neighborhood
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Neighborhood
BP	GO:0070646	protein modification by small protein removal	IEP	Neighborhood
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Neighborhood
CC	GO:0090730	Las1 complex	IEP	Neighborhood
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1902555	endoribonuclease complex	IEP	Neighborhood
CC	GO:1902911	protein kinase complex	IEP	Neighborhood
CC	GO:1905348	endonuclease complex	IEP	Neighborhood
CC	GO:1905354	exoribonuclease complex	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001373	Cullin_N	15	643
IPR019559	Cullin_neddylation_domain	670	732

External Links

No external refs found!

Solyc09g074680.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation