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  5. Solyc09g075090.1.1

Solyc09g075090.1.1


Description : SR30/34 RNA splicing factor


Gene families : OG0001375 (Archaeplastida) Phylogenetic Tree(s): OG0001375_tree ,
OG_05_0001509 (LandPlants) Phylogenetic Tree(s): OG_05_0001509_tree ,
OG_06_0001416 (SeedPlants) Phylogenetic Tree(s): OG_06_0001416_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g075090.1.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AT1G02840 At-SR34, SRP34,... RNA-binding (RRM/RBD/RNP motifs) family protein 0.08 Archaeplastida
AT4G02430 SR34b, At-SR34b RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Archaeplastida
Cre01.g026450 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
Cre06.g278239 No alias RNA processing.RNA splicing.spliceosome-associated... 0.06 Archaeplastida
GSVIVT01031132001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
GSVIVT01038636001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.06 Archaeplastida
Gb_20155 No alias SR30/34 RNA splicing factor 0.04 Archaeplastida
Gb_24206 No alias SR30/34 RNA splicing factor 0.07 Archaeplastida
LOC_Os01g21420.1 No alias SR30/34 RNA splicing factor 0.04 Archaeplastida
LOC_Os03g22380.1 No alias SR30/34 RNA splicing factor 0.06 Archaeplastida
MA_11621g0010 No alias SR30/34 RNA splicing factor 0.09 Archaeplastida
MA_259575g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c1_35700V3.1 No alias SER/ARG-rich protein 34A 0.03 Archaeplastida
Smo97566 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
Zm00001e031418_P004 No alias SR30/34 RNA splicing factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 43 110
IPR000504 RRM_dom 149 211
No external refs found!