Solyc09g075430.3.1

Description : component RPL19 of LSU proteome component

Gene families : OG0001902 (Archaeplastida) Phylogenetic Tree(s): OG0001902_tree ,
OG_05_0002211 (LandPlants) Phylogenetic Tree(s): OG_05_0002211_tree ,
OG_06_0003674 (SeedPlants) Phylogenetic Tree(s): OG_06_0003674_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g075430.3.1
Cluster	HCCA: Cluster_222

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00091p00066640	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	Archaeplastida
AT1G02780	emb2386	Ribosomal protein L19e family protein	0.14	Archaeplastida
AT3G16780	No alias	Ribosomal protein L19e family protein	0.05	Archaeplastida
Cpa\|evm.model.tig00021181.1	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	Archaeplastida
Cre02.g075700	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	Archaeplastida
GSVIVT01028052001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
GSVIVT01035096001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	Archaeplastida
Gb_23171	No alias	component RPL19 of LSU proteome component	0.14	Archaeplastida
Gb_23172	No alias	component RPL19 of LSU proteome component	0.14	Archaeplastida
LOC_Os03g21940.1	No alias	component RPL19 of LSU proteome component	0.11	Archaeplastida
LOC_Os03g38260.1	No alias	component RPL19 of LSU proteome component	0.14	Archaeplastida
MA_1839g0010	No alias	component RPL19 of LSU proteome component	0.1	Archaeplastida
MA_22977g0010	No alias	component RPL19 of LSU proteome component	0.13	Archaeplastida
Mp7g09050.1	No alias	component RPL19 of LSU proteome component	0.19	Archaeplastida
Pp3c15_5130V3.1	No alias	Ribosomal protein L19e family protein	0.08	Archaeplastida
Pp3c16_410V3.1	No alias	Ribosomal protein L19e family protein	0.17	Archaeplastida
Pp3c18_14440V3.1	No alias	Ribosomal protein L19e family protein	0.15	Archaeplastida
Pp3c21_11230V3.1	No alias	Ribosomal protein L19e family protein	0.15	Archaeplastida
Pp3c22_9980V3.1	No alias	Ribosomal protein L19e family protein	0.08	Archaeplastida
Pp3c25_8800V3.1	No alias	Ribosomal protein L19e family protein	0.04	Archaeplastida
Pp3c9_14720V3.1	No alias	Ribosomal protein L19e family protein	0.12	Archaeplastida
Smo179747	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
Smo271656	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	Archaeplastida
Zm00001e013683_P001	No alias	component RPL19 of LSU proteome component	0.1	Archaeplastida
Zm00001e020524_P001	No alias	component RPL19 of LSU proteome component	0.11	Archaeplastida
Zm00001e025202_P001	No alias	component RPL19 of LSU proteome component	0.16	Archaeplastida
Zm00001e036280_P001	No alias	component RPL19 of LSU proteome component	0.11	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000350	generation of catalytic spliceosome for second transesterification step	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Neighborhood
CC	GO:0005732	small nucleolar ribonucleoprotein complex	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0017048	Rho GTPase binding	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Neighborhood
CC	GO:0030684	preribosome	IEP	Neighborhood
CC	GO:0030688	preribosome, small subunit precursor	IEP	Neighborhood
CC	GO:0034457	Mpp10 complex	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044452	nucleolar part	IEP	Neighborhood
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000196	Ribosomal_L19/L19e	4	146

External Links

No external refs found!

Solyc09g075430.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation