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Description : Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica (sp|q2qzl4|u2a2b_orysj : 93.6)
Gene families : OG0000654 (Archaeplastida) Phylogenetic Tree(s): OG0000654_tree ,
OG_05_0005337 (LandPlants) Phylogenetic Tree(s): OG_05_0005337_tree ,
OG_06_0007539 (SeedPlants) Phylogenetic Tree(s): OG_06_0007539_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc09g090420.4.1 | |
| Cluster | HCCA: Cluster_131 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G60900 | No alias | U2 snRNP auxilliary factor, large subunit, splicing factor | 0.03 | Archaeplastida | |
| AT2G33435 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.03 | Archaeplastida | |
| Cpa|evm.model.tig00021464.4 | No alias | No description available | 0.02 | Archaeplastida | |
| Cre02.g093975 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | Archaeplastida | |
| Cre07.g352650 | No alias | No description available | 0.02 | Archaeplastida | |
| Cre09.g391949 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.05 | Archaeplastida | |
| GSVIVT01027871001 | No alias | Splicing factor U2af large subunit A OS=Arabidopsis thaliana | 0.08 | Archaeplastida | |
| Gb_22808 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.04 | Archaeplastida | |
| Gb_32245 | No alias | Splicing factor U2af large subunit A OS=Triticum... | 0.03 | Archaeplastida | |
| LOC_Os03g04520.2 | No alias | Splicing factor U2af large subunit B OS=Nicotiana... | 0.07 | Archaeplastida | |
| LOC_Os11g45590.1 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.03 | Archaeplastida | |
| MA_10110465g0010 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
| MA_9595064g0010 | No alias | Splicing factor U2af large subunit B OS=Arabidopsis... | 0.02 | Archaeplastida | |
| Mp6g18430.1 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.05 | Archaeplastida | |
| Mp6g18910.1 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.04 | Archaeplastida | |
| Pp3c10_9710V3.1 | No alias | U2 snRNP auxilliary factor, large subunit, splicing factor | 0.02 | Archaeplastida | |
| Pp3c14_9430V3.1 | No alias | U2 snRNP auxilliary factor, large subunit, splicing factor | 0.05 | Archaeplastida | |
| Pp3c25_5610V3.1 | No alias | U2 snRNP auxilliary factor, large subunit, splicing factor | 0.02 | Archaeplastida | |
| Pp3c6_9210V3.1 | No alias | U2 snRNP auxilliary factor, large subunit, splicing factor | 0.02 | Archaeplastida | |
| Smo160385 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | Archaeplastida | |
| Zm00001e021000_P006 | No alias | large subunit of U2AF pre-RNA splicing auxiliary factor complex | 0.03 | Archaeplastida | |
| Zm00001e038951_P001 | No alias | Splicing factor U2af large subunit A OS=Nicotiana... | 0.08 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Neighborhood |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Neighborhood |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
| MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Neighborhood |
| MF | GO:0004484 | mRNA guanylyltransferase activity | IEP | Neighborhood |
| MF | GO:0004843 | thiol-dependent ubiquitin-specific protease activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| CC | GO:0005634 | nucleus | IEP | Neighborhood |
| CC | GO:0005694 | chromosome | IEP | Neighborhood |
| CC | GO:0005875 | microtubule associated complex | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
| BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
| BP | GO:0006338 | chromatin remodeling | IEP | Neighborhood |
| BP | GO:0006370 | 7-methylguanosine mRNA capping | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006476 | protein deacetylation | IEP | Neighborhood |
| BP | GO:0006479 | protein methylation | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006996 | organelle organization | IEP | Neighborhood |
| BP | GO:0007010 | cytoskeleton organization | IEP | Neighborhood |
| BP | GO:0007051 | spindle organization | IEP | Neighborhood |
| MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Neighborhood |
| MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Neighborhood |
| MF | GO:0008192 | RNA guanylyltransferase activity | IEP | Neighborhood |
| BP | GO:0008213 | protein alkylation | IEP | Neighborhood |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | Neighborhood |
| BP | GO:0009452 | 7-methylguanosine RNA capping | IEP | Neighborhood |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Neighborhood |
| BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016458 | gene silencing | IEP | Neighborhood |
| BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| BP | GO:0016571 | histone methylation | IEP | Neighborhood |
| BP | GO:0016575 | histone deacetylation | IEP | Neighborhood |
| MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | Neighborhood |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | Neighborhood |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Neighborhood |
| BP | GO:0018208 | peptidyl-proline modification | IEP | Neighborhood |
| BP | GO:0022402 | cell cycle process | IEP | Neighborhood |
| BP | GO:0031047 | gene silencing by RNA | IEP | Neighborhood |
| MF | GO:0031491 | nucleosome binding | IEP | Neighborhood |
| BP | GO:0034968 | histone lysine methylation | IEP | Neighborhood |
| BP | GO:0035601 | protein deacylation | IEP | Neighborhood |
| BP | GO:0036260 | RNA capping | IEP | Neighborhood |
| BP | GO:0043044 | ATP-dependent chromatin remodeling | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0048519 | negative regulation of biological process | IEP | Neighborhood |
| BP | GO:0051225 | spindle assembly | IEP | Neighborhood |
| BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
| MF | GO:0061505 | DNA topoisomerase II activity | IEP | Neighborhood |
| MF | GO:0070568 | guanylyltransferase activity | IEP | Neighborhood |
| CC | GO:0070652 | HAUS complex | IEP | Neighborhood |
| BP | GO:0070925 | organelle assembly | IEP | Neighborhood |
| BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| BP | GO:0098732 | macromolecule deacylation | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |