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  5. Solyc09g092100.4.1

Solyc09g092100.4.1


Description : no description available(sp|f4jts8|nov_arath : 1857.0)


Gene families : OG0003188 (Archaeplastida) Phylogenetic Tree(s): OG0003188_tree ,
OG_05_0003813 (LandPlants) Phylogenetic Tree(s): OG_05_0003813_tree ,
OG_06_0003424 (SeedPlants) Phylogenetic Tree(s): OG_06_0003424_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g092100.4.1
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00174420 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00048p00175550 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AT4G13750 NOV Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase... 0.04 Archaeplastida
Cpa|evm.model.tig00000821.32 No alias No description available 0.02 Archaeplastida
GSVIVT01020920001 No alias No description available 0.03 Archaeplastida
LOC_Os03g58910.2 No alias no description available(sp|f4jts8|nov_arath : 756.0) 0.03 Archaeplastida
MA_10437130g0020 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_113855g0010 No alias no description available(sp|f4jts8|nov_arath : 403.0) 0.02 Archaeplastida
MA_15947g0010 No alias no description available(sp|f4jts8|nov_arath : 1101.0) 0.04 Archaeplastida
Mp3g08650.1 No alias no description available(sp|f4jts8|nov_arath : 1245.0) 0.02 Archaeplastida
Pp3c21_20720V3.1 No alias Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090730 Las1 complex IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
CC GO:1902555 endoribonuclease complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1905348 endonuclease complex IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR024975 DUF3883 2354 2436
No external refs found!