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  5. AMTR_s00030p00173920

AMTR_s00030p00173920 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.108

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.BEL transcription factor


Gene families : OG0000236 (Archaeplastida) Phylogenetic Tree(s): OG0000236_tree ,
OG_05_0000141 (LandPlants) Phylogenetic Tree(s): OG_05_0000141_tree ,
OG_06_0000919 (SeedPlants) Phylogenetic Tree(s): OG_06_0000919_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00030p00173920
Cluster HCCA: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
AT1G75430 BLH11 BEL1-like homeodomain 11 0.03 Archaeplastida
AT2G35940 EDA29, BLH1 BEL1-like homeodomain 1 0.03 Archaeplastida
AT5G02030 VAN, BLH9, RPL,... POX (plant homeobox) family protein 0.02 Archaeplastida
AT5G41410 BEL1 POX (plant homeobox) family protein 0.02 Archaeplastida
GSVIVT01009633001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01011146001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01025220001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01037575001 No alias RNA biosynthesis.transcriptional activation.HB... 0.07 Archaeplastida
Gb_28278 No alias transcription factor (BEL) 0.03 Archaeplastida
LOC_Os02g13310.1 No alias transcription factor (BEL) 0.02 Archaeplastida
LOC_Os03g47740.1 No alias transcription factor (BEL) 0.02 Archaeplastida
LOC_Os06g01934.1 No alias transcription factor (BEL) 0.02 Archaeplastida
LOC_Os11g06020.1 No alias transcription factor (BEL) 0.03 Archaeplastida
LOC_Os12g43950.1 No alias transcription factor (BEL) 0.02 Archaeplastida
Pp3c13_7150V3.1 No alias BEL1-like homeodomain 6 0.02 Archaeplastida
Pp3c15_11880V3.1 No alias BEL1-like homeodomain 7 0.03 Archaeplastida
Pp3c9_6780V3.1 No alias BEL1-like homeodomain 7 0.03 Archaeplastida
Solyc02g089940.4.1 No alias transcription factor (BEL) 0.04 Archaeplastida
Solyc04g079830.2.1 No alias transcription factor (BEL) 0.05 Archaeplastida
Solyc08g081400.4.1 No alias transcription factor (BEL) 0.06 Archaeplastida
Zm00001e026923_P002 No alias transcription factor (BEL) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Neighborhood
MF GO:0003995 acyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0003997 acyl-CoA oxidase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004455 ketol-acid reductoisomerase activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006635 fatty acid beta-oxidation IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008219 cell death IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0009062 fatty acid catabolic process IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009581 detection of external stimulus IEP Neighborhood
BP GO:0009582 detection of abiotic stimulus IEP Neighborhood
BP GO:0009583 detection of light stimulus IEP Neighborhood
BP GO:0009584 detection of visible light IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
BP GO:0016054 organic acid catabolic process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
BP GO:0018298 protein-chromophore linkage IEP Neighborhood
BP GO:0019395 fatty acid oxidation IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034440 lipid oxidation IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044242 cellular lipid catabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0046395 carboxylic acid catabolic process IEP Neighborhood
BP GO:0051606 detection of stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0072329 monocarboxylic acid catabolic process IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
InterPro domains Description Start Stop
IPR008422 Homeobox_KN_domain 413 452
IPR006563 POX_dom 215 346
No external refs found!