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  3. Solanum lycopersicum
  4. Sequence
  5. Solyc10g018203.1.1

Solyc10g018203.1.1


Description : no hits & (original description: none)


Gene families : OG0000177 (Archaeplastida) Phylogenetic Tree(s): OG0000177_tree ,
OG_05_0000071 (LandPlants) Phylogenetic Tree(s): OG_05_0000071_tree ,
OG_06_0000026 (SeedPlants) Phylogenetic Tree(s): OG_06_0000026_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g018203.1.1
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
Solyc00g500094.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.05 Archaeplastida
Solyc00g500354.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.01 Archaeplastida
Solyc01g065625.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc01g065987.1.1 No alias No annotation 0.01 Archaeplastida
Solyc01g066445.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.01 Archaeplastida
Solyc02g014543.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc03g083485.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.07 Archaeplastida
Solyc03g119905.1.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc04g064805.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.03 Archaeplastida
Solyc04g073953.1.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc04g150146.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Solyc05g013617.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Solyc05g015493.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.05 Archaeplastida
Solyc06g035495.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Solyc06g048683.1.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc06g048825.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.01 Archaeplastida
Solyc06g066853.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.01 Archaeplastida
Solyc07g019493.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.01 Archaeplastida
Solyc07g019625.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.01 Archaeplastida
Solyc07g044985.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.01 Archaeplastida
Solyc08g062725.1.1 No alias No annotation 0.04 Archaeplastida
Solyc09g064243.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.01 Archaeplastida
Solyc09g074575.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.01 Archaeplastida
Solyc09g075965.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.01 Archaeplastida
Solyc09g150145.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.01 Archaeplastida
Solyc10g038045.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.05 Archaeplastida
Solyc10g074433.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc10g074475.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.01 Archaeplastida
Solyc10g074824.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc11g012995.1.1 No alias No annotation 0.05 Archaeplastida
Solyc11g028105.1.1 No alias No annotation 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005047 signal recognition particle binding IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!