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  5. Solyc10g051035.1.1

Solyc10g051035.1.1


Description : Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana (sp|q94hw2|polr1_arath : 176.0)


Gene families : OG0000375 (Archaeplastida) Phylogenetic Tree(s): OG0000375_tree ,
OG_05_0000187 (LandPlants) Phylogenetic Tree(s): OG_05_0000187_tree ,
OG_06_0000080 (SeedPlants) Phylogenetic Tree(s): OG_06_0000080_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g051035.1.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Solyc00g500336.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.05 Archaeplastida
Solyc01g057133.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc01g105763.1.1 No alias No annotation 0.02 Archaeplastida
Solyc03g095775.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc05g048755.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc06g005525.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc06g009785.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.02 Archaeplastida
Solyc06g060627.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc06g061225.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.02 Archaeplastida
Solyc07g020925.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc07g042553.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.02 Archaeplastida
Solyc07g150109.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.02 Archaeplastida
Solyc08g062655.1.1 No alias No annotation 0.04 Archaeplastida
Solyc09g011695.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Solyc09g065525.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.02 Archaeplastida
Solyc11g064845.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.02 Archaeplastida
Solyc12g045033.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013103 RVT_2 11 111
No external refs found!