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  5. Solyc10g081920.2.1

Solyc10g081920.2.1


Description : subunit beta of cargo adaptor F-subcomplex


Gene families : OG0003156 (Archaeplastida) Phylogenetic Tree(s): OG0003156_tree ,
OG_05_0003042 (LandPlants) Phylogenetic Tree(s): OG_05_0003042_tree ,
OG_06_0003893 (SeedPlants) Phylogenetic Tree(s): OG_06_0003893_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g081920.2.1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00238440 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 Archaeplastida
AT4G31480 No alias Coatomer, beta subunit 0.16 Archaeplastida
AT4G31490 No alias Coatomer, beta subunit 0.2 Archaeplastida
Cpa|evm.model.tig00020553.156 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.04 Archaeplastida
Cre04.g217921 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 Archaeplastida
GSVIVT01035511001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.2 Archaeplastida
Gb_03760 No alias subunit beta of cargo adaptor F-subcomplex 0.09 Archaeplastida
Gb_23100 No alias subunit beta of cargo adaptor F-subcomplex 0.13 Archaeplastida
LOC_Os01g17430.1 No alias subunit beta of cargo adaptor F-subcomplex 0.05 Archaeplastida
LOC_Os11g07280.1 No alias subunit beta of cargo adaptor F-subcomplex 0.12 Archaeplastida
MA_10431517g0010 No alias subunit beta of cargo adaptor F-subcomplex 0.03 Archaeplastida
MA_10432097g0020 No alias subunit beta of cargo adaptor F-subcomplex 0.09 Archaeplastida
MA_230138g0010 No alias subunit beta of cargo adaptor F-subcomplex 0.06 Archaeplastida
Mp5g08450.1 No alias subunit beta of cargo adaptor F-subcomplex 0.13 Archaeplastida
Pp3c25_10770V3.1 No alias Coatomer, beta subunit 0.1 Archaeplastida
Pp3c6_720V3.1 No alias Coatomer, beta subunit 0.07 Archaeplastida
Pp3c7_8430V3.1 No alias Coatomer, beta subunit 0.08 Archaeplastida
Smo160340 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 Archaeplastida
Zm00001e009041_P001 No alias subunit beta of cargo adaptor F-subcomplex 0.13 Archaeplastida
Zm00001e017416_P001 No alias subunit beta of cargo adaptor F-subcomplex 0.2 Archaeplastida
Zm00001e025465_P001 No alias subunit beta of cargo adaptor F-subcomplex 0.14 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Neighborhood
CC GO:0000139 Golgi membrane IEP Neighborhood
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0004470 malic enzyme activity IEP Neighborhood
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008318 protein prenyltransferase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Neighborhood
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016615 malate dehydrogenase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
BP GO:0018196 peptidyl-asparagine modification IEP Neighborhood
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Neighborhood
BP GO:0018342 protein prenylation IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Neighborhood
BP GO:0097354 prenylation IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
MF GO:1901567 fatty acid derivative binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 21 466
IPR029446 COPB1_appendage_platform_dom 813 940
IPR011710 Coatomer_bsu_C 669 807
No external refs found!