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  5. AMTR_s00031p00165100

AMTR_s00031p00165100 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00031.70

Description : Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana


Gene families : OG0002304 (Archaeplastida) Phylogenetic Tree(s): OG0002304_tree ,
OG_05_0002049 (LandPlants) Phylogenetic Tree(s): OG_05_0002049_tree ,
OG_06_0002095 (SeedPlants) Phylogenetic Tree(s): OG_06_0002095_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00031p00165100
Cluster HCCA: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
AT4G00830 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Archaeplastida
Cpa|evm.model.tig00020961.48 No alias No description available 0.03 Archaeplastida
GSVIVT01036119001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 Archaeplastida
LOC_Os10g06130.1 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os11g14430.2 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 Archaeplastida
Mp1g12580.1 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 Archaeplastida
Pp3c12_1580V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Pp3c17_1210V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Smo169951 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc09g009890.4.1 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 Archaeplastida
Solyc10g009220.3.1 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e021852_P001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e039207_P005 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006184 obsolete GTP catabolic process IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 201 267
IPR000504 RRM_dom 296 365
IPR000504 RRM_dom 121 191
No external refs found!