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  5. Solyc11g005170.2.1

Solyc11g005170.2.1


Description : no hits & (original description: none)


Gene families : OG0003285 (Archaeplastida) Phylogenetic Tree(s): OG0003285_tree ,
OG_05_0003755 (LandPlants) Phylogenetic Tree(s): OG_05_0003755_tree ,
OG_06_0004534 (SeedPlants) Phylogenetic Tree(s): OG_06_0004534_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g005170.2.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00270600 evm_27.TU.AmTr_v1... 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.08 Archaeplastida
AMTR_s00017p00234440 evm_27.TU.AmTr_v1... No description available 0.06 Archaeplastida
AT5G09880 No alias Splicing factor, CC1-like 0.07 Archaeplastida
Cpa|evm.model.tig00001302.16 No alias No description available 0.02 Archaeplastida
GSVIVT01023998001 No alias No description available 0.03 Archaeplastida
Gb_39308 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os03g05830.1 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10430689g0020 No alias no hits & (original description: none) 0.08 Archaeplastida
Mp7g19710.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c7_5140V3.1 No alias Splicing factor, CC1-like 0.03 Archaeplastida
Zm00001e004710_P005 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e012773_P005 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e038994_P002 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR029123 RBM39_linker 402 499
IPR000504 RRM_dom 215 277
IPR000504 RRM_dom 312 382
IPR000504 RRM_dom 505 558
No external refs found!