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  5. Solyc11g017370.3.1

Solyc11g017370.3.1


Description : RNA editing factor (AEF1)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0012004 (LandPlants) Phylogenetic Tree(s): OG_05_0012004_tree ,
OG_06_0012058 (SeedPlants) Phylogenetic Tree(s): OG_06_0012058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g017370.3.1
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.03 Archaeplastida
AMTR_s00004p00076010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
AMTR_s00006p00257020 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.02 Archaeplastida
AMTR_s00008p00232800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.03 Archaeplastida
AMTR_s00008p00241920 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00012p00252800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
AMTR_s00014p00068600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g43980,... 0.02 Archaeplastida
AMTR_s00031p00067070 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.04 Archaeplastida
AMTR_s00032p00219990 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
AMTR_s00039p00023570 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
AMTR_s00039p00132380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
AMTR_s00040p00098330 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
AMTR_s00046p00214930 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g11290,... 0.08 Archaeplastida
AMTR_s00057p00137550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g36980,... 0.03 Archaeplastida
AMTR_s00057p00151990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
AMTR_s00062p00213230 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
AMTR_s00068p00072270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
AMTR_s00130p00019530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
AMTR_s02193p00008230 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.04 Archaeplastida
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
AT1G31920 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.14 Archaeplastida
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 Archaeplastida
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.11 Archaeplastida
GSVIVT01000086001 No alias Pentatricopeptide repeat-containing protein At3g14330... 0.03 Archaeplastida
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.06 Archaeplastida
GSVIVT01009227001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.08 Archaeplastida
GSVIVT01009407001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.06 Archaeplastida
GSVIVT01011333001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.07 Archaeplastida
GSVIVT01011479001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.07 Archaeplastida
GSVIVT01012201001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.06 Archaeplastida
GSVIVT01012461001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
GSVIVT01020091001 No alias RNA processing.organelle machineries.RNA... 0.07 Archaeplastida
GSVIVT01023971001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.06 Archaeplastida
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01031251001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Archaeplastida
GSVIVT01032721001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.06 Archaeplastida
GSVIVT01033190001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.06 Archaeplastida
GSVIVT01033735001 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida
GSVIVT01036142001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
GSVIVT01036207001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 Archaeplastida
Gb_00259 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.04 Archaeplastida
Gb_02229 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_03345 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_05554 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_06185 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_07638 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 Archaeplastida
Gb_11220 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_11688 No alias OTP70 plastidial RNA splicing factor 0.04 Archaeplastida
Gb_14172 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_14324 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_14867 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_16448 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_17076 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_17294 No alias RNA editing factor (MEF3) 0.02 Archaeplastida
Gb_17379 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_17916 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_21567 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
Gb_21745 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Gb_23088 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_23678 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_24823 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_25130 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Archaeplastida
Gb_26154 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
Gb_26526 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
Gb_27057 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_28393 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_31034 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_31702 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_33210 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_36538 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_36806 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_37516 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_37517 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_39402 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
LOC_Os01g62910.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
LOC_Os02g50280.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
LOC_Os03g04390.1 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
LOC_Os03g44210.2 No alias RNA editing factor (SEL1/PDM1) 0.03 Archaeplastida
LOC_Os03g58100.1 No alias RNA editing factor (OTP85) 0.02 Archaeplastida
LOC_Os03g59264.1 No alias lectin chaperone (CRT) 0.03 Archaeplastida
LOC_Os04g02850.1 No alias RNA editing factor (OTP84) 0.04 Archaeplastida
LOC_Os04g39410.1 No alias RNA editing factor (OTP86) 0.04 Archaeplastida
LOC_Os05g50950.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.04 Archaeplastida
LOC_Os07g02280.1 No alias RNA editing factor (OTP80) 0.03 Archaeplastida
LOC_Os07g07620.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.04 Archaeplastida
LOC_Os07g09370.1 No alias RNA editing factor (CRR28) 0.04 Archaeplastida
LOC_Os10g33730.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_10426444g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 Archaeplastida
MA_10431227g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_11074g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_123466g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_20622g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_72886g0010 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.04 Archaeplastida
Pp3c22_1710V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
Pp3c24_8560V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
Smo100125 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.02 Archaeplastida
Smo424099 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 Archaeplastida
Smo465 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Smo73641 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
Smo82024 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Smo85415 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Zm00001e000301_P001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.07 Archaeplastida
Zm00001e002552_P001 No alias RNA editing factor (SEL1/PDM1) 0.03 Archaeplastida
Zm00001e005067_P001 No alias Pentatricopeptide repeat-containing protein At2g42920,... 0.02 Archaeplastida
Zm00001e011417_P001 No alias RNA editing factor (CRR28) 0.03 Archaeplastida
Zm00001e015440_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Zm00001e015727_P001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 Archaeplastida
Zm00001e016923_P001 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Zm00001e021457_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Zm00001e023498_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e029186_P001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.05 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
Zm00001e032499_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0002161 aminoacyl-tRNA editing activity IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004645 phosphorylase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
MF GO:0008184 glycogen phosphorylase activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 297 322
IPR002885 Pentatricopeptide_repeat 190 231
IPR002885 Pentatricopeptide_repeat 397 442
IPR002885 Pentatricopeptide_repeat 81 130
IPR002885 Pentatricopeptide_repeat 498 545
IPR002885 Pentatricopeptide_repeat 599 646
No external refs found!