Solyc11g032025.1.1


Description : Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana (sp|q94hw2|polr1_arath : 191.0)


Gene families : OG0000375 (Archaeplastida) Phylogenetic Tree(s): OG0000375_tree ,
OG_05_0000187 (LandPlants) Phylogenetic Tree(s): OG_05_0000187_tree ,
OG_06_0000080 (SeedPlants) Phylogenetic Tree(s): OG_06_0000080_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g032025.1.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Solyc01g010175.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc02g062565.1.1 No alias No annotation 0.04 Archaeplastida
Solyc03g044937.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Solyc03g078355.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Solyc03g080117.1.1 No alias no hits & (original description: none) 0.1 Archaeplastida
Solyc04g011915.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.06 Archaeplastida
Solyc05g010755.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc05g048755.1.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc06g005525.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc06g009975.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc06g031714.1.1 No alias No annotation 0.06 Archaeplastida
Solyc08g065675.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.05 Archaeplastida
Solyc08g068145.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc09g011695.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.05 Archaeplastida
Solyc09g031513.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc09g056393.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.06 Archaeplastida
Solyc09g065525.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.1 Archaeplastida
Solyc09g150123.1.1 No alias No annotation 0.08 Archaeplastida
Solyc10g039387.1.1 No alias no hits & (original description: none) 0.15 Archaeplastida
Solyc10g044988.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.1 Archaeplastida
Solyc11g010245.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Solyc12g019235.1.1 No alias No annotation 0.09 Archaeplastida
Solyc12g019917.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.06 Archaeplastida
Solyc12g044958.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
InterPro domains Description Start Stop
IPR013103 RVT_2 2 70
No external refs found!