Solyc11g072260.2.1

Description : component RPS13 of SSU proteome

Gene families : OG0001993 (Archaeplastida) Phylogenetic Tree(s): OG0001993_tree ,
OG_05_0001936 (LandPlants) Phylogenetic Tree(s): OG_05_0001936_tree ,
OG_06_0002387 (SeedPlants) Phylogenetic Tree(s): OG_06_0002387_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc11g072260.2.1
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00029190	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	Archaeplastida
AMTR_s00109p00088200	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	Archaeplastida
AT3G60770	No alias	Ribosomal protein S13/S15	0.34	Archaeplastida
AT4G00100	ATRPS13A, RPS13,...	ribosomal protein S13A	0.34	Archaeplastida
Cpa\|evm.model.tig00000489.15	No alias	40S ribosomal protein S13 OS=Glycine max	0.08	Archaeplastida
Cre07.g331900	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.37	Archaeplastida
GSVIVT01018537001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.32	Archaeplastida
GSVIVT01027637001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.26	Archaeplastida
Gb_18181	No alias	component RPS13 of SSU proteome	0.17	Archaeplastida
Gb_34582	No alias	component RPS13 of SSU proteome	0.11	Archaeplastida
LOC_Os07g38540.1	No alias	component RPS13 of SSU proteome	0.07	Archaeplastida
LOC_Os08g02400.1	No alias	component RPS13 of SSU proteome	0.24	Archaeplastida
LOC_Os08g02410.1	No alias	component RPS13 of SSU proteome	0.32	Archaeplastida
MA_141232g0010	No alias	component RPS13 of SSU proteome	0.2	Archaeplastida
Mp4g03410.1	No alias	component RPS13 of SSU proteome	0.38	Archaeplastida
Pp3c11_1100V3.1	No alias	ribosomal protein S13A	0.35	Archaeplastida
Pp3c16_15220V3.1	No alias	ribosomal protein S13A	0.17	Archaeplastida
Pp3c7_26720V3.1	No alias	ribosomal protein S13A	0.27	Archaeplastida
Smo440805	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.17	Archaeplastida
Zm00001e021837_P003	No alias	component RPS13 of SSU proteome	0.27	Archaeplastida
Zm00001e021839_P001	No alias	component RPS13 of SSU proteome	0.31	Archaeplastida
Zm00001e029210_P002	No alias	component RPS13 of SSU proteome	0.29	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Neighborhood
BP	GO:0001510	RNA methylation	IEP	Neighborhood
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0030488	tRNA methylation	IEP	Neighborhood
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
CC	GO:0034708	methyltransferase complex	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
CC	GO:0043527	tRNA methyltransferase complex	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR012606	Ribosomal_S13/S15_N	1	60
IPR000589	Ribosomal_S15	74	145

External Links

No external refs found!

Solyc11g072260.2.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation