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  5. Solyc12g009060.2.1

Solyc12g009060.2.1


Description : component VPS2/CHMP2 of ESCRT-III complex


Gene families : OG0001089 (Archaeplastida) Phylogenetic Tree(s): OG0001089_tree ,
OG_05_0004324 (LandPlants) Phylogenetic Tree(s): OG_05_0004324_tree ,
OG_06_0004747 (SeedPlants) Phylogenetic Tree(s): OG_06_0004747_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g009060.2.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00151310 evm_27.TU.AmTr_v1... Vesicle trafficking.endomembrane trafficking.ESCRT... 0.05 Archaeplastida
AT2G06530 VPS2.1 SNF7 family protein 0.05 Archaeplastida
Cpa|evm.model.tig00020510.41 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.03 Archaeplastida
Cpa|evm.model.tig00020830.6 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.03 Archaeplastida
Cre04.g213450 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.04 Archaeplastida
Cre17.g735400 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.05 Archaeplastida
GSVIVT01015115001 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.07 Archaeplastida
GSVIVT01028365001 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.03 Archaeplastida
Gb_23887 No alias component VPS2/CHMP2 of ESCRT-III complex 0.03 Archaeplastida
Gb_31864 No alias component VPS2/CHMP2 of ESCRT-III complex 0.03 Archaeplastida
LOC_Os07g13270.1 No alias component VPS2/CHMP2 of ESCRT-III complex 0.02 Archaeplastida
LOC_Os11g47710.1 No alias component VPS2/CHMP2 of ESCRT-III complex 0.05 Archaeplastida
Mp8g06820.1 No alias component VPS2/CHMP2 of ESCRT-III complex 0.02 Archaeplastida
Pp3c13_8060V3.1 No alias SNF7 family protein 0.02 Archaeplastida
Zm00001e009370_P001 No alias component VPS2/CHMP2 of ESCRT-III complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004143 diacylglycerol kinase activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006665 sphingolipid metabolic process IEP Neighborhood
BP GO:0006672 ceramide metabolic process IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0008198 ferrous iron binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005024 Snf7_fam 17 186
No external refs found!