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  5. Solyc12g011050.2.1

Solyc12g011050.2.1


Description : Flowering time control protein FPA OS=Arabidopsis thaliana (sp|q8lpq9|fpa_arath : 136.0)


Gene families : OG0003475 (Archaeplastida) Phylogenetic Tree(s): OG0003475_tree ,
OG_05_0009680 (LandPlants) Phylogenetic Tree(s): OG_05_0009680_tree ,
OG_06_0010450 (SeedPlants) Phylogenetic Tree(s): OG_06_0010450_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g011050.2.1
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
AT2G43410 FPA RNA binding 0.05 Archaeplastida
AT4G12640 No alias RNA recognition motif (RRM)-containing protein 0.03 Archaeplastida
GSVIVT01010842001 No alias Flowering time control protein FPA OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os09g12730.1 No alias Flowering time control protein FPA OS=Arabidopsis... 0.06 Archaeplastida
MA_61973g0010 No alias Flowering time control protein FPA OS=Arabidopsis... 0.06 Archaeplastida
Mp4g06830.1 No alias Flowering time control protein FPA OS=Arabidopsis... 0.06 Archaeplastida
Pp3c11_21890V3.1 No alias RNA binding 0.03 Archaeplastida
Pp3c7_3950V3.1 No alias RNA binding 0.03 Archaeplastida
Zm00001e034721_P001 No alias Flowering time control protein FPA OS=Arabidopsis... 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 179 230
IPR000504 RRM_dom 35 99
IPR012921 SPOC_C 481 597
No external refs found!