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  5. Solyc12g019180.2.1

Solyc12g019180.2.1


Description : Polygalacturonase OS=Prunus persica (sp|p48979|pglr_prupe : 459.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 234.3)


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0001044 (LandPlants) Phylogenetic Tree(s): OG_05_0001044_tree ,
OG_06_0000479 (SeedPlants) Phylogenetic Tree(s): OG_06_0000479_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g019180.2.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00197480 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.02 Archaeplastida
AMTR_s00003p00198650 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.04 Archaeplastida
AMTR_s00019p00031370 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AMTR_s00019p00250890 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 Archaeplastida
AMTR_s00066p00135670 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.04 Archaeplastida
AMTR_s00074p00182020 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00085p00112760 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.03 Archaeplastida
AT1G05650 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G05660 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT1G10640 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT1G56710 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT1G80170 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G43860 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G43870 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G43880 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT2G43890 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT3G26610 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G57510 ADPG1 Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT4G01890 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT5G14650 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01013800001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01017302001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01017305001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01017644001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01031298001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01032114001 No alias Polygalacturonase OS=Actinidia deliciosa 0.03 Archaeplastida
GSVIVT01032117001 No alias Cell wall.pectin.modification and... 0.04 Archaeplastida
GSVIVT01032447001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01033359001 No alias Cell wall.pectin.modification and... 0.02 Archaeplastida
GSVIVT01033362001 No alias Cell wall.pectin.modification and... 0.04 Archaeplastida
GSVIVT01033364001 No alias Cell wall.pectin.modification and... 0.05 Archaeplastida
GSVIVT01038241001 No alias Polygalacturonase OS=Prunus persica 0.02 Archaeplastida
Gb_07779 No alias Polygalacturonase OS=Actinidia deliciosa... 0.02 Archaeplastida
Gb_12018 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 Archaeplastida
Gb_13356 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 Archaeplastida
Gb_27331 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 Archaeplastida
LOC_Os01g43490.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
LOC_Os01g44970.1 No alias polygalacturonase (PGX1) 0.04 Archaeplastida
LOC_Os01g66710.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
LOC_Os03g11760.1 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 Archaeplastida
LOC_Os03g59330.1 No alias polygalacturonase (QRT2) 0.04 Archaeplastida
LOC_Os05g46510.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os05g46520.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.01 Archaeplastida
LOC_Os05g50260.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_101764g0010 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_10862g0010 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
MA_90135g0010 No alias Polygalacturonase OS=Chamaecyparis obtusa... 0.03 Archaeplastida
Pp3c23_3890V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Smo78038 No alias Cell wall.pectin.modification and... 0.07 Archaeplastida
Solyc01g087280.2.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc02g067630.3.1 No alias Polygalacturonase OS=Prunus persica... 0.06 Archaeplastida
Solyc02g067640.3.1 No alias Polygalacturonase OS=Prunus persica... 0.05 Archaeplastida
Solyc04g008230.3.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc05g005170.4.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc07g015870.4.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc10g080210.2.1 No alias polygalacturonase (QRT2) 0.04 Archaeplastida
Solyc12g009420.3.1 No alias Polygalacturonase QRT2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc12g019220.1.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Solyc12g019230.2.1 No alias Polygalacturonase OS=Prunus persica... 0.05 Archaeplastida
Zm00001e006091_P001 No alias polygalacturonase (QRT2) 0.01 Archaeplastida
Zm00001e011814_P002 No alias Polygalacturonase OS=Actinidia deliciosa... 0.04 Archaeplastida
Zm00001e013553_P001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e017465_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e019002_P001 No alias Polygalacturonase OS=Prunus persica... 0.05 Archaeplastida
Zm00001e026600_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e027720_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e032294_P001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e036989_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
BP GO:0006751 glutathione catabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016842 amidine-lyase activity IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
BP GO:0042219 cellular modified amino acid catabolic process IEP Neighborhood
BP GO:0043171 peptide catabolic process IEP Neighborhood
BP GO:0044273 sulfur compound catabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 57 381
No external refs found!