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  5. GSVIVT01002731001

GSVIVT01002731001


Description : Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor


Gene families : OG0000410 (Archaeplastida) Phylogenetic Tree(s): OG0000410_tree ,
OG_05_0002118 (LandPlants) Phylogenetic Tree(s): OG_05_0002118_tree ,
OG_06_0002144 (SeedPlants) Phylogenetic Tree(s): OG_06_0002144_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01002731001
Cluster HCCA: Cluster_222

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00192140 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.03 Archaeplastida
AMTR_s00061p00213120 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.02 Archaeplastida
AMTR_s00065p00174980 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.03 Archaeplastida
AT1G77600 No alias ARM repeat superfamily protein 0.05 Archaeplastida
AT5G47690 No alias binding 0.04 Archaeplastida
Gb_09525 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
Gb_23673 No alias cohesin cofactor (PDS5) 0.06 Archaeplastida
LOC_Os06g17840.1 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
MA_10093130g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10426926g0010 No alias cohesin cofactor (PDS5) 0.05 Archaeplastida
MA_10434055g0010 No alias cohesin cofactor (PDS5) 0.03 Archaeplastida
MA_10434588g0010 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida
MA_214607g0010 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
MA_25261g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_523g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Pp3c10_24900V3.1 No alias binding 0.05 Archaeplastida
Pp3c20_23000V3.1 No alias binding 0.05 Archaeplastida
Pp3c23_10270V3.1 No alias binding 0.1 Archaeplastida
Solyc06g060380.3.1 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
Solyc11g012770.2.1 No alias cohesin cofactor (PDS5) 0.06 Archaeplastida
Zm00001e015094_P002 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
Zm00001e019139_P001 No alias cohesin cofactor (PDS5) 0.03 Archaeplastida
Zm00001e022962_P003 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida
Zm00001e030989_P001 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!