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  5. GSVIVT01008139001

GSVIVT01008139001


Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000791 (SeedPlants) Phylogenetic Tree(s): OG_06_0000791_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008139001
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00218870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00001p00267050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00002p00262760 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00017p00244900 evm_27.TU.AmTr_v1... Floral homeotic protein PMADS 2 OS=Petunia hybrida 0.03 Archaeplastida
AMTR_s00066p00109320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00071p00193200 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00140p00045380 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT1G71692 XAL1, AGL12 AGAMOUS-like 12 0.05 Archaeplastida
AT2G22630 AGL17 AGAMOUS-like 17 0.05 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT2G45650 AGL6 AGAMOUS-like 6 0.06 Archaeplastida
AT3G04100 AGL57 AGAMOUS-like 57 0.04 Archaeplastida
AT3G54340 AP3, ATAP3 K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.06 Archaeplastida
AT3G61120 AGL13 AGAMOUS-like 13 0.03 Archaeplastida
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.03 Archaeplastida
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.06 Archaeplastida
AT5G23260 AGL32, TT16, ABS K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01019883001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01025945001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.09 Archaeplastida
GSVIVT01038474001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Gb_03068 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_03807 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_05128 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Gb_15398 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Gb_16301 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Gb_41550 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os01g10504.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os01g66290.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os02g07430.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os02g36924.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os02g45770.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os03g11614.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os03g54160.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os03g54170.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os05g11380.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os05g11414.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os05g34940.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g23980.1 No alias MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os07g01820.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os08g41950.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os09g02780.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os09g32948.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os12g10540.3 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
MA_10434339g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.03 Archaeplastida
MA_13933g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_16120g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_16629g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_19387g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_25342g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_333471g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_502016g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 Archaeplastida
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_629987g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.03 Archaeplastida
MA_6544g0010 No alias Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.03 Archaeplastida
MA_9382435g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_9771g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.03 Archaeplastida
Pp3c17_13070V3.1 No alias AGAMOUS-like 66 0.04 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.02 Archaeplastida
Pp3c8_6890V3.1 No alias AGAMOUS-like 104 0.02 Archaeplastida
Pp3c8_6920V3.1 No alias AGAMOUS-like 66 0.03 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
Solyc01g080785.1.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc01g093960.3.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.05 Archaeplastida
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Solyc02g089210.4.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc06g064840.4.1 No alias no description available(sp|f6i457|ag11c_vitvi : 172.0) 0.06 Archaeplastida
Solyc07g055920.4.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.03 Archaeplastida
Solyc11g005120.3.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc11g010570.2.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc12g038510.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc12g056460.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e005705_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e007902_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.07 Archaeplastida
Zm00001e012024_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e013738_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e015447_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Zm00001e019029_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e019057_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e027031_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e030373_P001 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Neighborhood
MF GO:0003872 6-phosphofructokinase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008443 phosphofructokinase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016289 CoA hydrolase activity IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0019200 carbohydrate kinase activity IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002487 TF_Kbox 89 172
IPR002100 TF_MADSbox 10 57
No external refs found!