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  5. GSVIVT01009983001

GSVIVT01009983001


Description : Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana


Gene families : OG0005027 (Archaeplastida) Phylogenetic Tree(s): OG0005027_tree ,
OG_05_0007229 (LandPlants) Phylogenetic Tree(s): OG_05_0007229_tree ,
OG_06_0009739 (SeedPlants) Phylogenetic Tree(s): OG_06_0009739_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009983001
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT1G77030 No alias hydrolases, acting on acid anhydrides, in... 0.14 Archaeplastida
Cpa|evm.model.tig00022075.32 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.03 Archaeplastida
Cre12.g513701 No alias DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.11 Archaeplastida
Gb_13284 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.04 Archaeplastida
Mp7g18590.1 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.07 Archaeplastida
Pp3c14_6810V3.1 No alias hydrolases, acting on acid anhydrides, in... 0.05 Archaeplastida
Smo165331 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.04 Archaeplastida
Smo438217 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.05 Archaeplastida
Solyc10g009070.3.1 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.05 Archaeplastida
Zm00001e022381_P001 No alias DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004004 ATP-dependent RNA helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
BP GO:0000154 rRNA modification IEP Neighborhood
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0031167 rRNA methylation IEP Neighborhood
CC GO:0031360 intrinsic component of thylakoid membrane IEP Neighborhood
CC GO:0031361 integral component of thylakoid membrane IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0036265 RNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0070475 rRNA base methylation IEP Neighborhood
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 254 365
IPR011545 DEAD/DEAH_box_helicase_dom 51 218
IPR012541 DBP10_C 631 692
No external refs found!