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  5. GSVIVT01011013001

GSVIVT01011013001


Description : RNA-binding protein BRN1 OS=Arabidopsis thaliana


Gene families : OG0001519 (Archaeplastida) Phylogenetic Tree(s): OG0001519_tree ,
OG_05_0005098 (LandPlants) Phylogenetic Tree(s): OG_05_0005098_tree ,
OG_06_0004750 (SeedPlants) Phylogenetic Tree(s): OG_06_0004750_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011013001
Cluster HCCA: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
Zm00001e028353_P001 No alias RNA-binding protein BRN1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e031386_P001 No alias RNA-binding protein BRN1 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0005092 GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
CC GO:0031011 Ino80 complex IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0033202 DNA helicase complex IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
CC GO:0097346 INO80-type complex IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 353 423
IPR000504 RRM_dom 17 81
IPR000504 RRM_dom 105 168
No external refs found!