1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01011562001

GSVIVT01011562001


Description : Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3i component


Gene families : OG0003862 (Archaeplastida) Phylogenetic Tree(s): OG0003862_tree ,
OG_05_0004743 (LandPlants) Phylogenetic Tree(s): OG_05_0004743_tree ,
OG_06_0004853 (SeedPlants) Phylogenetic Tree(s): OG_06_0004853_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011562001
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00052p00194740 evm_27.TU.AmTr_v1... Protein biosynthesis.translation... 0.05 Archaeplastida
AT2G46280 TRIP-1, TIF3I1 TGF-beta receptor interacting protein 1 0.04 Archaeplastida
Cpa|evm.model.tig00021070.64 No alias No description available 0.02 Archaeplastida
Cre03.g194400 No alias Protein biosynthesis.translation... 0.04 Archaeplastida
LOC_Os05g16660.2 No alias component eIF3i of eIF3 mRNA-to-PIC binding complex 0.09 Archaeplastida
LOC_Os08g21660.1 No alias component eIF3i of eIF3 mRNA-to-PIC binding complex 0.07 Archaeplastida
Mp2g16930.1 No alias component eIF3i of eIF3 mRNA-to-PIC binding complex 0.07 Archaeplastida
Pp3c14_22340V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.07 Archaeplastida
Pp3c17_19090V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.08 Archaeplastida
Smo269383 No alias Protein biosynthesis.translation... 0.07 Archaeplastida
Solyc11g017070.2.1 No alias component eIF3i of eIF3 mRNA-to-PIC binding complex 0.09 Archaeplastida
Zm00001e011477_P001 No alias component eIF3i of eIF3 mRNA-to-PIC binding complex 0.03 Archaeplastida
Zm00001e032881_P001 No alias component eIF3i of eIF3 mRNA-to-PIC binding complex 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 7 37
IPR001680 WD40_repeat 283 314
IPR001680 WD40_repeat 43 80
IPR001680 WD40_repeat 188 219
No external refs found!