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  5. GSVIVT01014261001

GSVIVT01014261001


Description : Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec24 component


Gene families : OG0001187 (Archaeplastida) Phylogenetic Tree(s): OG0001187_tree ,
OG_05_0003933 (LandPlants) Phylogenetic Tree(s): OG_05_0003933_tree ,
OG_06_0005426 (SeedPlants) Phylogenetic Tree(s): OG_06_0005426_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01014261001
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00084390 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.09 Archaeplastida
AMTR_s00071p00045940 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.07 Archaeplastida
AT3G07100 ERMO2, SEC24A Sec23/Sec24 protein transport family protein 0.08 Archaeplastida
AT3G44340 CEF clone eighty-four 0.05 Archaeplastida
AT4G32640 No alias Sec23/Sec24 protein transport family protein 0.05 Archaeplastida
Cpa|evm.model.tig00000829.3 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.04 Archaeplastida
Cre01.g035850 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.04 Archaeplastida
Cre02.g091150 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 Archaeplastida
Gb_11357 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.08 Archaeplastida
Gb_26869 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.06 Archaeplastida
Gb_38621 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.11 Archaeplastida
LOC_Os04g04020.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.11 Archaeplastida
LOC_Os12g24250.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.07 Archaeplastida
MA_10290120g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10430919g0010 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.09 Archaeplastida
MA_10434705g0010 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.05 Archaeplastida
MA_45050g0010 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.06 Archaeplastida
MA_923164g0010 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.05 Archaeplastida
Mp7g13350.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.06 Archaeplastida
Mp7g13560.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.08 Archaeplastida
Pp3c1_17880V3.1 No alias Sec23/Sec24 protein transport family protein 0.03 Archaeplastida
Pp3c1_22750V3.1 No alias Sec23/Sec24 protein transport family protein 0.02 Archaeplastida
Pp3c1_22900V3.1 No alias clone eighty-four 0.05 Archaeplastida
Pp3c2_16660V3.1 No alias Sec23/Sec24 protein transport family protein 0.05 Archaeplastida
Smo140536 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.05 Archaeplastida
Smo157789 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 Archaeplastida
Solyc02g082220.3.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.1 Archaeplastida
Solyc06g084210.3.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.05 Archaeplastida
Zm00001e008766_P001 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.13 Archaeplastida
Zm00001e021459_P002 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.09 Archaeplastida
Zm00001e040573_P001 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.12 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 ER to Golgi vesicle-mediated transport IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Neighborhood
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030126 COPI vesicle coat IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Neighborhood
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR012990 Sec23_24_beta_S 594 677
IPR006900 Sec23/24_helical_dom 689 792
IPR006895 Znf_Sec23_Sec24 277 315
IPR006896 Sec23/24_trunk_dom 352 588
No external refs found!