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  5. GSVIVT01015149001

GSVIVT01015149001


Description : RNA processing.RNA decay.exosome complex.associated co-factors.SUPERKILLER (SKI) regulation complex.SKI8 component


Gene families : OG0006437 (Archaeplastida) Phylogenetic Tree(s): OG0006437_tree ,
OG_05_0008566 (LandPlants) Phylogenetic Tree(s): OG_05_0008566_tree ,
OG_06_0009435 (SeedPlants) Phylogenetic Tree(s): OG_06_0009435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015149001
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
LOC_Os11g43890.1 No alias component VIP3 of PAF1C transcription initiation and... 0.03 Archaeplastida
Mp1g17120.1 No alias component VIP3 of PAF1C transcription initiation and... 0.02 Archaeplastida
Pp3c2_28090V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Smo269750 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 Archaeplastida
Zm00001e021045_P001 No alias component VIP3 of PAF1C transcription initiation and... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
CC GO:0005849 mRNA cleavage factor complex IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 156 201
IPR001680 WD40_repeat 54 88
IPR001680 WD40_repeat 96 131
IPR001680 WD40_repeat 236 271
No external refs found!