1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01015407001

GSVIVT01015407001


Description : DNA damage response.DNA repair mechanisms.mismatch repair (MMR).MSH2-x mismatch repair heterodimers.MSH7 component


Gene families : OG0001515 (Archaeplastida) Phylogenetic Tree(s): OG0001515_tree ,
OG_05_0006412 (LandPlants) Phylogenetic Tree(s): OG_05_0006412_tree ,
OG_06_0007207 (SeedPlants) Phylogenetic Tree(s): OG_06_0007207_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01015407001
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00029910 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.mismatch... 0.03 Archaeplastida
AMTR_s00022p00172100 evm_27.TU.AmTr_v1... DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00078p00191830 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.mismatch... 0.09 Archaeplastida
AT3G24495 MSH7, ATMSH7, MSH6-2 MUTS homolog 7 0.15 Archaeplastida
Cpa|evm.model.tig00000489.16 No alias DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre05.g235750 No alias DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana 0.08 Archaeplastida
Gb_18995 No alias DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os01g08540.1 No alias component MSH7 of MSH2-x mismatch repair heterodimers 0.09 Archaeplastida
LOC_Os09g24220.1 No alias component MSH6 of MSH2-x mismatch repair heterodimers 0.07 Archaeplastida
MA_10429110g0010 No alias component MSH6 of MSH2-x mismatch repair heterodimers 0.04 Archaeplastida
MA_214705g0010 No alias DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Mp2g14640.1 No alias component MSH6 of MSH2-x mismatch repair heterodimers 0.02 Archaeplastida
Mp7g16850.1 No alias component MSH7 of MSH2-x mismatch repair heterodimers 0.11 Archaeplastida
Pp3c20_1350V3.1 No alias MUTS homolog 6 0.05 Archaeplastida
Solyc01g079520.3.1 No alias component MSH6 of MSH2-x mismatch repair heterodimers 0.13 Archaeplastida
Zm00001e016678_P004 No alias component MSH7 of MSH2-x mismatch repair heterodimers 0.17 Archaeplastida
Zm00001e034087_P001 No alias component MSH6 of MSH2-x mismatch repair heterodimers 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
CC GO:0000796 condensin complex IEP Neighborhood
CC GO:0000808 origin recognition complex IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003896 DNA primase activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006323 DNA packaging IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007076 mitotic chromosome condensation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0030261 chromosome condensation IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR000432 DNA_mismatch_repair_MutS_C 859 1049
IPR007860 DNA_mmatch_repair_MutS_con_dom 406 548
IPR007695 DNA_mismatch_repair_MutS-lik_N 280 390
IPR007696 DNA_mismatch_repair_MutS_core 568 788
No external refs found!