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  5. GSVIVT01016218001

GSVIVT01016218001


Description : Chromatin organisation.histone modifications.histone lysine methylation/demethylation.AOD group histone demethylase activities.LDL/KDM1 lysine-specific demethylase


Gene families : OG0001739 (Archaeplastida) Phylogenetic Tree(s): OG0001739_tree ,
OG_05_0001723 (LandPlants) Phylogenetic Tree(s): OG_05_0001723_tree ,
OG_06_0001595 (SeedPlants) Phylogenetic Tree(s): OG_06_0001595_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016218001
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Gb_14064 No alias lysine-specific demethylase (LDL/KDM1) 0.03 Archaeplastida
Gb_40551 No alias lysine-specific demethylase (LDL/KDM1) 0.03 Archaeplastida
LOC_Os04g47270.1 No alias lysine-specific demethylase (LDL/KDM1) 0.08 Archaeplastida
LOC_Os08g04780.1 No alias lysine-specific demethylase (LDL/KDM1) 0.03 Archaeplastida
Smo79938 No alias Chromatin organisation.histone modifications.histone... 0.03 Archaeplastida
Solyc07g063500.4.1 No alias lysine-specific demethylase (LDL/KDM1) 0.02 Archaeplastida
Solyc11g008320.3.1 No alias lysine-specific demethylase (LDL/KDM1) 0.02 Archaeplastida
Zm00001e007263_P001 No alias lysine-specific demethylase (LDL/KDM1) 0.05 Archaeplastida
Zm00001e015890_P001 No alias lysine-specific demethylase (LDL/KDM1) 0.02 Archaeplastida
Zm00001e040280_P001 No alias lysine-specific demethylase (LDL/KDM1) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007526 SWIRM 100 177
IPR002937 Amino_oxidase 203 628
No external refs found!