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  5. GSVIVT01016309001

GSVIVT01016309001


Description : Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.HDA9-PWR deacetylation complex.PWR component


Gene families : OG0002623 (Archaeplastida) Phylogenetic Tree(s): OG0002623_tree ,
OG_05_0003107 (LandPlants) Phylogenetic Tree(s): OG_05_0003107_tree ,
OG_06_0005880 (SeedPlants) Phylogenetic Tree(s): OG_06_0005880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016309001
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT3G52250 No alias Duplicated homeodomain-like superfamily protein 0.13 Archaeplastida
Cpa|evm.model.tig00020629.96 No alias No description available 0.02 Archaeplastida
Cre06.g264400 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Gb_13421 No alias component PWR of HDA9-PWR deacetylation complex 0.07 Archaeplastida
LOC_Os05g03550.1 No alias component PWR of HDA9-PWR deacetylation complex 0.07 Archaeplastida
MA_10428429g0010 No alias no hits & (original description: none) 0.11 Archaeplastida
MA_104862g0010 No alias component PWR of HDA9-PWR deacetylation complex 0.08 Archaeplastida
MA_12404g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_14319g0010 No alias component PWR of HDA9-PWR deacetylation complex 0.08 Archaeplastida
MA_9049830g0010 No alias component PWR of HDA9-PWR deacetylation complex 0.08 Archaeplastida
Mp1g21450.1 No alias component PWR of HDA9-PWR deacetylation complex 0.03 Archaeplastida
Pp3c11_8780V3.1 No alias Duplicated homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c11_8790V3.1 No alias Duplicated homeodomain-like superfamily protein 0.12 Archaeplastida
Pp3c12_21290V3.1 No alias Duplicated homeodomain-like superfamily protein 0.09 Archaeplastida
Pp3c12_21500V3.1 No alias Duplicated homeodomain-like superfamily protein 0.05 Archaeplastida
Pp3c4_6990V3.1 No alias Duplicated homeodomain-like superfamily protein 0.07 Archaeplastida
Pp3c4_7100V3.1 No alias Duplicated homeodomain-like superfamily protein 0.12 Archaeplastida
Pp3c7_16800V3.1 No alias Duplicated homeodomain-like superfamily protein 0.12 Archaeplastida
Solyc04g049120.4.1 No alias component PWR of HDA9-PWR deacetylation complex 0.12 Archaeplastida
Zm00001e027573_P003 No alias component PWR of HDA9-PWR deacetylation complex 0.17 Archaeplastida
Zm00001e029482_P006 No alias component PWR of HDA9-PWR deacetylation complex 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 877 917
IPR001005 SANT/Myb 659 700
No external refs found!