1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01016313001

GSVIVT01016313001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPP0 component


Gene families : OG0002275 (Archaeplastida) Phylogenetic Tree(s): OG0002275_tree ,
OG_05_0001766 (LandPlants) Phylogenetic Tree(s): OG_05_0001766_tree ,
OG_06_0002404 (SeedPlants) Phylogenetic Tree(s): OG_06_0002404_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016313001
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT3G09200 No alias Ribosomal protein L10 family protein 0.1 Archaeplastida
AT3G11250 No alias Ribosomal protein L10 family protein 0.07 Archaeplastida
Cpa|evm.model.tig00000615.69 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Cre12.g520500 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Gb_00059 No alias component RPP0 of LSU proteome component 0.03 Archaeplastida
Gb_29821 No alias 60S acidic ribosomal protein P0 OS=Glycine max... 0.05 Archaeplastida
LOC_Os08g03640.1 No alias component RPP0 of LSU proteome component 0.07 Archaeplastida
LOC_Os12g03880.1 No alias component RPP0 of LSU proteome component 0.04 Archaeplastida
MA_10433058g0020 No alias component RPP0 of LSU proteome component 0.13 Archaeplastida
Mp1g07120.1 No alias component RPP0 of LSU proteome component 0.09 Archaeplastida
Pp3c11_3700V3.1 No alias Ribosomal protein L10 family protein 0.03 Archaeplastida
Smo149765 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
Smo437282 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
Solyc05g054580.3.1 No alias component RPP0 of LSU proteome component 0.07 Archaeplastida
Zm00001e021786_P001 No alias component RPP0 of LSU proteome component 0.03 Archaeplastida
Zm00001e029292_P001 No alias component RPP0 of LSU proteome component 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!