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  5. GSVIVT01016794001

GSVIVT01016794001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.REA1 assembly factor (MDN1)


Gene families : OG0003847 (Archaeplastida) Phylogenetic Tree(s): OG0003847_tree ,
OG_05_0004720 (LandPlants) Phylogenetic Tree(s): OG_05_0004720_tree ,
OG_06_0005414 (SeedPlants) Phylogenetic Tree(s): OG_06_0005414_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01016794001
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00104300 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
AMTR_s00067p00107150 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
AT1G67120 No alias ATPases;nucleotide binding;ATP... 0.23 Archaeplastida
Cpa|evm.model.tig00000403.82 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
Gb_21123 No alias LSU ribosomal large subunit export factor (MDN1) 0.1 Archaeplastida
LOC_Os10g31856.1 No alias Midasin OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os10g31864.1 No alias LSU ribosomal large subunit export factor (MDN1) 0.07 Archaeplastida
MA_16845g0010 No alias no hits & (original description: none) 0.2 Archaeplastida
MA_91092g0010 No alias Midasin OS=Arabidopsis thaliana... 0.09 Archaeplastida
MA_91092g0020 No alias Midasin OS=Arabidopsis thaliana... 0.19 Archaeplastida
Mp1g16360.1 No alias LSU ribosomal large subunit export factor (MDN1) 0.08 Archaeplastida
Pp3c8_22130V3.1 No alias ATPases;nucleotide binding;ATP... 0.06 Archaeplastida
Solyc04g072260.3.1 No alias LSU ribosomal large subunit export factor (MDN1) 0.07 Archaeplastida
Zm00001e031919_P002 No alias LSU ribosomal large subunit export factor (MDN1) 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
InterPro domains Description Start Stop
IPR011704 ATPase_dyneun-rel_AAA 1190 1234
IPR011704 ATPase_dyneun-rel_AAA 1286 1373
IPR011704 ATPase_dyneun-rel_AAA 1807 1946
IPR011704 ATPase_dyneun-rel_AAA 309 425
IPR011704 ATPase_dyneun-rel_AAA 632 686
No external refs found!