GSVIVT01016902001

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS30 component

Gene families : OG0003752 (Archaeplastida) Phylogenetic Tree(s): OG0003752_tree ,
OG_05_0003387 (LandPlants) Phylogenetic Tree(s): OG_05_0003387_tree ,
OG_06_0004145 (SeedPlants) Phylogenetic Tree(s): OG_06_0004145_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01016902001
Cluster	HCCA: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00192320	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	Archaeplastida
Cpa\|evm.model.tig00001003.33	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	Archaeplastida
Cre16.g666301	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	Archaeplastida
Gb_23464	No alias	component RPS30 of SSU proteome	0.08	Archaeplastida
LOC_Os06g07580.1	No alias	component RPS30 of SSU proteome	0.08	Archaeplastida
MA_10432727g0010	No alias	component RPS30 of SSU proteome	0.06	Archaeplastida
Mp2g24290.1	No alias	component RPS30 of SSU proteome	0.05	Archaeplastida
Mp8g09080.1	No alias	component RPS30 of SSU proteome	0.07	Archaeplastida
Pp3c1_420V3.1	No alias	Ribosomal protein S30 family protein	0.1	Archaeplastida
Pp3c2_28870V3.1	No alias	Ribosomal protein S30 family protein	0.03	Archaeplastida
Pp3c2_29010V3.1	No alias	Ribosomal protein S30 family protein	0.09	Archaeplastida
Pp3c7_26650V3.1	No alias	Ribosomal protein S30 family protein	0.03	Archaeplastida
Smo227173	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
Solyc08g076340.3.1	No alias	component RPS30 of SSU proteome	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
BP	GO:0006334	nucleosome assembly	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
CC	GO:0032993	protein-DNA complex	IEP	Neighborhood
BP	GO:0034728	nucleosome organization	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044815	DNA packaging complex	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006846	Ribosomal_S30	54	110

External Links

No external refs found!

GSVIVT01016902001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation