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  5. GSVIVT01017651001

GSVIVT01017651001


Description : DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana


Gene families : OG0000695 (Archaeplastida) Phylogenetic Tree(s): OG0000695_tree ,
OG_05_0001582 (LandPlants) Phylogenetic Tree(s): OG_05_0001582_tree ,
OG_06_0001971 (SeedPlants) Phylogenetic Tree(s): OG_06_0001971_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017651001
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AT3G06480 No alias DEAD box RNA helicase family protein 0.03 Archaeplastida
Cre01.g028200 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
GSVIVT01007665001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.09 Archaeplastida
Solyc01g057760.4.1 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis... 0.02 Archaeplastida
Solyc12g044860.3.1 No alias DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e011376_P001 No alias ATP-dependent RNA helicase-like protein DB10... 0.03 Archaeplastida
Zm00001e018885_P005 No alias pre-mRNA splicing regulator (DDX5) 0.03 Archaeplastida
Zm00001e020972_P005 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e025883_P002 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e027719_P003 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 222 330
IPR011545 DEAD/DEAH_box_helicase_dom 15 185
No external refs found!