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  5. GSVIVT01017972001

GSVIVT01017972001


Description : RNA biosynthesis.transcriptional activation.PHD finger transcription factor


Gene families : OG0000311 (Archaeplastida) Phylogenetic Tree(s): OG0000311_tree ,
OG_05_0000567 (LandPlants) Phylogenetic Tree(s): OG_05_0000567_tree ,
OG_06_0001295 (SeedPlants) Phylogenetic Tree(s): OG_06_0001295_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01017972001
Cluster HCCA: Cluster_222

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00050160 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.04 Archaeplastida
AMTR_s00039p00203500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
AMTR_s00140p00029580 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.11 Archaeplastida
AMTR_s00146p00080830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.06 Archaeplastida
AT2G27980 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.08 Archaeplastida
AT2G36720 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.08 Archaeplastida
AT5G36740 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.03 Archaeplastida
Cre01.g018200 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.05 Archaeplastida
Cre06.g296950 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.01 Archaeplastida
Cre12.g516150 No alias No description available 0.02 Archaeplastida
Cre16.g694208 No alias No description available 0.05 Archaeplastida
Gb_06644 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.06 Archaeplastida
Gb_10088 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.02 Archaeplastida
Gb_41247 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.04 Archaeplastida
LOC_Os04g59510.1 No alias PHD finger transcription factor 0.04 Archaeplastida
LOC_Os06g01170.1 No alias PHD finger transcription factor 0.02 Archaeplastida
MA_139275g0010 No alias PHD finger transcription factor 0.11 Archaeplastida
MA_14500g0010 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.14 Archaeplastida
MA_3931g0010 No alias PHD finger transcription factor 0.03 Archaeplastida
Mp2g04330.1 No alias PHD finger transcription factor 0.06 Archaeplastida
Mp6g21090.2 No alias PHD finger transcription factor 0.03 Archaeplastida
Pp3c11_24730V3.1 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.04 Archaeplastida
Pp3c14_7890V3.1 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.02 Archaeplastida
Pp3c1_22210V3.1 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.02 Archaeplastida
Pp3c25_4970V3.1 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.11 Archaeplastida
Pp3c25_9550V3.1 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.07 Archaeplastida
Pp3c7_8630V3.1 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.02 Archaeplastida
Solyc03g005170.3.1 No alias PHD finger transcription factor 0.03 Archaeplastida
Solyc09g065340.3.1 No alias PHD finger transcription factor 0.04 Archaeplastida
Solyc09g076010.3.1 No alias PHD finger transcription factor 0.06 Archaeplastida
Solyc10g083800.2.1 No alias PHD finger transcription factor 0.05 Archaeplastida
Solyc10g084650.3.1 No alias PHD finger transcription factor 0.05 Archaeplastida
Solyc11g066480.2.1 No alias PHD finger transcription factor 0.07 Archaeplastida
Zm00001e005667_P001 No alias PHD finger transcription factor 0.12 Archaeplastida
Zm00001e012046_P003 No alias PHD finger transcription factor 0.03 Archaeplastida
Zm00001e013368_P001 No alias PHD finger transcription factor 0.06 Archaeplastida
Zm00001e032904_P002 No alias PHD finger transcription factor 0.06 Archaeplastida
Zm00001e042012_P001 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR032308 Jas 389 461
IPR019787 Znf_PHD-finger 502 544
No external refs found!