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  5. AMTR_s00040p00092540

AMTR_s00040p00092540 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.53

Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-G component


Gene families : OG0001659 (Archaeplastida) Phylogenetic Tree(s): OG0001659_tree ,
OG_05_0004881 (LandPlants) Phylogenetic Tree(s): OG_05_0004881_tree ,
OG_06_0006017 (SeedPlants) Phylogenetic Tree(s): OG_06_0006017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00092540
Cluster HCCA: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
AT2G23930 SNRNP-G probable small nuclear ribonucleoprotein G 0.07 Archaeplastida
AT3G11500 No alias Small nuclear ribonucleoprotein family protein 0.06 Archaeplastida
Cpa|evm.model.tig00020553.48 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
Cre03.g164101 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.05 Archaeplastida
Cre13.g566050 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 Archaeplastida
Gb_00157 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.04 Archaeplastida
LOC_Os03g29740.1 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.07 Archaeplastida
LOC_Os07g41790.2 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
LOC_Os08g08040.1 No alias component LSm7 of U6-associated LSm accessory... 0.04 Archaeplastida
MA_91807g0010 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.04 Archaeplastida
Mp4g07410.1 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.07 Archaeplastida
Pp3c21_9740V3.1 No alias Small nuclear ribonucleoprotein family protein 0.04 Archaeplastida
Pp3c5_21480V3.1 No alias probable small nuclear ribonucleoprotein G 0.03 Archaeplastida
Pp3c8_4480V3.1 No alias Small nuclear ribonucleoprotein family protein 0.04 Archaeplastida
Smo227744 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 Archaeplastida
Smo415303 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 Archaeplastida
Solyc09g009640.3.1 No alias component LSm7 of U6-associated LSm accessory... 0.04 Archaeplastida
Zm00001e006823_P001 No alias component LSm7 of U6-associated LSm accessory... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 71
No external refs found!