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  5. GSVIVT01018715001

GSVIVT01018715001


Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin I/II complex.CAP-E2/SMC2 component


Gene families : OG0004321 (Archaeplastida) Phylogenetic Tree(s): OG0004321_tree ,
OG_05_0004824 (LandPlants) Phylogenetic Tree(s): OG_05_0004824_tree ,
OG_06_0005570 (SeedPlants) Phylogenetic Tree(s): OG_06_0005570_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01018715001
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00193070 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.chromatin... 0.09 Archaeplastida
AT3G47460 ATSMC2 Structural maintenance of chromosomes (SMC) family protein 0.14 Archaeplastida
AT5G62410 TTN3, ATSMC4,... structural maintenance of chromosomes 2 0.16 Archaeplastida
Cpa|evm.model.tig00000615.55 No alias Cell cycle.mitosis and meiosis.chromatin... 0.05 Archaeplastida
Cre02.g086650 No alias Cell cycle.mitosis and meiosis.chromatin... 0.05 Archaeplastida
Gb_17843 No alias component CAP-E2/SMC2 of condensin I/II complex 0.14 Archaeplastida
LOC_Os01g67740.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.06 Archaeplastida
MA_15346g0010 No alias component CAP-E2/SMC2 of condensin I/II complex 0.13 Archaeplastida
MA_5349g0010 No alias Structural maintenance of chromosomes protein 2-1... 0.02 Archaeplastida
Mp1g04330.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.15 Archaeplastida
Pp3c13_8840V3.1 No alias structural maintenance of chromosomes 2 0.07 Archaeplastida
Smo137981 No alias Cell cycle.mitosis and meiosis.chromatin... 0.06 Archaeplastida
Solyc03g093250.2.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.1 Archaeplastida
Solyc03g093260.3.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.1 Archaeplastida
Zm00001e018930_P001 No alias component CAP-E2/SMC2 of condensin I/II complex 0.18 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006323 DNA packaging IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007076 mitotic chromosome condensation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0030261 chromosome condensation IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 867 1156
IPR010935 SMC_hinge 473 593
No external refs found!