GSVIVT01018833001

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.GATA transcription factor

Gene families : OG0000094 (Archaeplastida) Phylogenetic Tree(s): OG0000094_tree ,
OG_05_0000055 (LandPlants) Phylogenetic Tree(s): OG_05_0000055_tree ,
OG_06_0000244 (SeedPlants) Phylogenetic Tree(s): OG_06_0000244_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01018833001
Cluster	HCCA: Cluster_175

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00011p00253850	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AMTR_s00017p00242860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AMTR_s00056p00080350	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
AMTR_s00106p00136770	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AT3G54810	BME3-ZF, BME3, GATA8	Plant-specific GATA-type zinc finger transcription...	0.06	Archaeplastida
AT3G60530	GATA4	GATA transcription factor 4	0.02	Archaeplastida
AT5G66320	GATA5	GATA transcription factor 5	0.03	Archaeplastida
Cre01.g025050	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
GSVIVT01035614001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
Gb_25568	No alias	transcription factor (GATA)	0.03	Archaeplastida
Gb_34949	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os02g12790.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
LOC_Os02g56250.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
LOC_Os06g37450.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
LOC_Os10g40810.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
MA_44185g0010	No alias	transcription factor (GATA)	0.02	Archaeplastida
MA_70991g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
Pp3c20_22670V3.1	No alias	GATA transcription factor 9	0.03	Archaeplastida
Solyc04g015360.3.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc05g053500.4.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
Solyc05g056120.3.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc06g075140.3.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e005940_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida
Zm00001e016165_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida
Zm00001e026256_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e027439_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e037876_P002	No alias	transcription factor (GATA)	0.02	Archaeplastida
Zm00001e039468_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	224	258

External Links

No external refs found!

GSVIVT01018833001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation